miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17036 3' -57.1 NC_004333.2 + 26087 0.66 0.560199
Target:  5'- uGACGGUCGCCaaccUGgG-CGCCUcuuuccUGGCg -3'
miRNA:   3'- -UUGUCAGCGGgc--ACgUaGCGGA------ACCG- -5'
17036 3' -57.1 NC_004333.2 + 1221 0.66 0.560199
Target:  5'- uGCuuGUCGUCgGcGCGcgcCGCCUUGGCu -3'
miRNA:   3'- uUGu-CAGCGGgCaCGUa--GCGGAACCG- -5'
17036 3' -57.1 NC_004333.2 + 27537 0.66 0.560199
Target:  5'- ----aUCGCaaGUGCcgCGCCggGGCg -3'
miRNA:   3'- uugucAGCGggCACGuaGCGGaaCCG- -5'
17036 3' -57.1 NC_004333.2 + 5173 0.66 0.549324
Target:  5'- cGCAGcuugCGCCUGauugaaCAUCGCCUgcaGGCg -3'
miRNA:   3'- uUGUCa---GCGGGCac----GUAGCGGAa--CCG- -5'
17036 3' -57.1 NC_004333.2 + 5895 0.66 0.549324
Target:  5'- uGCAGUUGUCCagcaccGUGUCGCCUucgcUGGUa -3'
miRNA:   3'- uUGUCAGCGGGca----CGUAGCGGA----ACCG- -5'
17036 3' -57.1 NC_004333.2 + 16035 0.67 0.496083
Target:  5'- cGACAGUCGCCgCGUuCGaCGUgcUGGCg -3'
miRNA:   3'- -UUGUCAGCGG-GCAcGUaGCGgaACCG- -5'
17036 3' -57.1 NC_004333.2 + 9810 0.67 0.494
Target:  5'- cGGCcGUCguaugccuGCCCGUccGCGUCGCCUgagcgcaugacgGGCa -3'
miRNA:   3'- -UUGuCAG--------CGGGCA--CGUAGCGGAa-----------CCG- -5'
17036 3' -57.1 NC_004333.2 + 31151 0.67 0.485708
Target:  5'- uGCAucGcCGCCCGccuugGCAUCGCCgcccagacGGCg -3'
miRNA:   3'- uUGU--CaGCGGGCa----CGUAGCGGaa------CCG- -5'
17036 3' -57.1 NC_004333.2 + 18853 0.67 0.464266
Target:  5'- cGCAGUUG-CCGUGCGcaacgcaUUGCCgccggGGCg -3'
miRNA:   3'- uUGUCAGCgGGCACGU-------AGCGGaa---CCG- -5'
17036 3' -57.1 NC_004333.2 + 30130 0.68 0.435492
Target:  5'- --aAGaUGCCC-UGCG-CGCCUUGGCc -3'
miRNA:   3'- uugUCaGCGGGcACGUaGCGGAACCG- -5'
17036 3' -57.1 NC_004333.2 + 8524 0.68 0.425811
Target:  5'- --aAGUCGCCCGUGCcgaacagCGCgaccGGCa -3'
miRNA:   3'- uugUCAGCGGGCACGua-----GCGgaa-CCG- -5'
17036 3' -57.1 NC_004333.2 + 30725 0.68 0.425811
Target:  5'- uGGCaAGcUCGgCCGUgGCGUCGCCgaGGUa -3'
miRNA:   3'- -UUG-UC-AGCgGGCA-CGUAGCGGaaCCG- -5'
17036 3' -57.1 NC_004333.2 + 9245 0.68 0.41626
Target:  5'- -cCGGUCGCgUCGUGguUCGUCUcgugcuuguUGGCc -3'
miRNA:   3'- uuGUCAGCG-GGCACguAGCGGA---------ACCG- -5'
17036 3' -57.1 NC_004333.2 + 41970 0.68 0.40684
Target:  5'- uGACGuGUCGCCaGUGCGggcgaccgCGCCaaGGCu -3'
miRNA:   3'- -UUGU-CAGCGGgCACGUa-------GCGGaaCCG- -5'
17036 3' -57.1 NC_004333.2 + 44570 0.69 0.396635
Target:  5'- cGCAGgCGCCCGacuggGCGaauacgaUCGCCgcgaugUGGCg -3'
miRNA:   3'- uUGUCaGCGGGCa----CGU-------AGCGGa-----ACCG- -5'
17036 3' -57.1 NC_004333.2 + 183 0.7 0.336503
Target:  5'- cGCgAGUCcacuGCCCGUGCGccCGCCggcuUGGCu -3'
miRNA:   3'- uUG-UCAG----CGGGCACGUa-GCGGa---ACCG- -5'
17036 3' -57.1 NC_004333.2 + 36318 0.7 0.304809
Target:  5'- -gUAGUCGCCgggCGUcGCAUCGCCUacGGUu -3'
miRNA:   3'- uuGUCAGCGG---GCA-CGUAGCGGAa-CCG- -5'
17036 3' -57.1 NC_004333.2 + 14774 0.71 0.262325
Target:  5'- cGCAGUCGCugcgCCGcagGCAUCGCCguucuacgcgaucgGGCa -3'
miRNA:   3'- uUGUCAGCG----GGCa--CGUAGCGGaa------------CCG- -5'
17036 3' -57.1 NC_004333.2 + 9889 0.71 0.261648
Target:  5'- cACGGUCGCgCGUGCAUCGaUCUcgucgaacaGGCa -3'
miRNA:   3'- uUGUCAGCGgGCACGUAGC-GGAa--------CCG- -5'
17036 3' -57.1 NC_004333.2 + 37325 0.72 0.254958
Target:  5'- cGGCGGUgcucgacgCGCUCGaaucUGCGUCGCCcUGGCu -3'
miRNA:   3'- -UUGUCA--------GCGGGC----ACGUAGCGGaACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.