miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17037 3' -54.9 NC_004333.2 + 26532 0.66 0.686443
Target:  5'- cCGAUCUGC-GCGCG-Ca-GCAUGCc- -3'
miRNA:   3'- -GUUAGACGuCGCGCaGgaCGUACGcg -5'
17037 3' -54.9 NC_004333.2 + 28450 0.66 0.686443
Target:  5'- -----aGCGGCGcCGUCUUGCAcgccaccaGCGCc -3'
miRNA:   3'- guuagaCGUCGC-GCAGGACGUa-------CGCG- -5'
17037 3' -54.9 NC_004333.2 + 11019 0.66 0.679747
Target:  5'- cCGcgCUGCGGgaugccgcacgugauCGCGUCgUGCG-GCGUg -3'
miRNA:   3'- -GUuaGACGUC---------------GCGCAGgACGUaCGCG- -5'
17037 3' -54.9 NC_004333.2 + 29675 0.66 0.675273
Target:  5'- ---gCUGCAGCGUccGUCg-GCGUGCcgGCa -3'
miRNA:   3'- guuaGACGUCGCG--CAGgaCGUACG--CG- -5'
17037 3' -54.9 NC_004333.2 + 19133 0.66 0.675273
Target:  5'- gCGAUCguggGCGGCGCGg--UGCucGCGCu -3'
miRNA:   3'- -GUUAGa---CGUCGCGCaggACGuaCGCG- -5'
17037 3' -54.9 NC_004333.2 + 27667 0.66 0.675273
Target:  5'- -----aGCGGCGCGgcggcggCCgGCAgcgguUGCGCg -3'
miRNA:   3'- guuagaCGUCGCGCa------GGaCGU-----ACGCG- -5'
17037 3' -54.9 NC_004333.2 + 15808 0.66 0.66406
Target:  5'- -----cGCGGCGCugaacGUCgUGC-UGCGCa -3'
miRNA:   3'- guuagaCGUCGCG-----CAGgACGuACGCG- -5'
17037 3' -54.9 NC_004333.2 + 25759 0.66 0.66406
Target:  5'- gCGGUCUGauCGGUGCGc---GCAUGCGCc -3'
miRNA:   3'- -GUUAGAC--GUCGCGCaggaCGUACGCG- -5'
17037 3' -54.9 NC_004333.2 + 8839 0.66 0.66406
Target:  5'- ---cCUGCGGUGCGUC--GUAgaaGCGCg -3'
miRNA:   3'- guuaGACGUCGCGCAGgaCGUa--CGCG- -5'
17037 3' -54.9 NC_004333.2 + 4771 0.66 0.662937
Target:  5'- -cGUCUGCcuGCGCGggcggCUGCGggaccauagcgauUGCGCg -3'
miRNA:   3'- guUAGACGu-CGCGCag---GACGU-------------ACGCG- -5'
17037 3' -54.9 NC_004333.2 + 168 0.66 0.652816
Target:  5'- aCGAUCgGCgccuGGCGCGagUCCacUGCccGUGCGCc -3'
miRNA:   3'- -GUUAGaCG----UCGCGC--AGG--ACG--UACGCG- -5'
17037 3' -54.9 NC_004333.2 + 2499 0.66 0.652816
Target:  5'- ---gCUGaucGCGCGcCCgcucgguaggUGCAUGCGCa -3'
miRNA:   3'- guuaGACgu-CGCGCaGG----------ACGUACGCG- -5'
17037 3' -54.9 NC_004333.2 + 44389 0.66 0.642679
Target:  5'- --cUCgGCGGCGCGUgcgcgguacaacggCCUGCcgggcucgcuggcugGUGCGUg -3'
miRNA:   3'- guuAGaCGUCGCGCA--------------GGACG---------------UACGCG- -5'
17037 3' -54.9 NC_004333.2 + 3622 0.66 0.641552
Target:  5'- -uGUCgauCAGUGCGUaCUUGUacGUGCGCg -3'
miRNA:   3'- guUAGac-GUCGCGCA-GGACG--UACGCG- -5'
17037 3' -54.9 NC_004333.2 + 2955 0.67 0.630279
Target:  5'- ---cCUGCAGCuGCG-CgaGCGUGaCGCc -3'
miRNA:   3'- guuaGACGUCG-CGCaGgaCGUAC-GCG- -5'
17037 3' -54.9 NC_004333.2 + 914 0.67 0.630279
Target:  5'- uGGUCgGCAuUGCGcCCUcguaGCGUGCGCc -3'
miRNA:   3'- gUUAGaCGUcGCGCaGGA----CGUACGCG- -5'
17037 3' -54.9 NC_004333.2 + 18208 0.67 0.607749
Target:  5'- cCGGUg-GCAGCGCGgCCgcgcucgGCAcGCGCu -3'
miRNA:   3'- -GUUAgaCGUCGCGCaGGa------CGUaCGCG- -5'
17037 3' -54.9 NC_004333.2 + 3562 0.67 0.607749
Target:  5'- -----cGCAGCGCGUCg-GCcgaccacauaGUGCGCc -3'
miRNA:   3'- guuagaCGUCGCGCAGgaCG----------UACGCG- -5'
17037 3' -54.9 NC_004333.2 + 4942 0.67 0.607749
Target:  5'- ----aUGCGGCGCGg---GCAUGCGa -3'
miRNA:   3'- guuagACGUCGCGCaggaCGUACGCg -5'
17037 3' -54.9 NC_004333.2 + 4893 0.67 0.607749
Target:  5'- ----aUGUAGCGCG-CgCUGCgauaGUGCGCc -3'
miRNA:   3'- guuagACGUCGCGCaG-GACG----UACGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.