miRNA display CGI


Results 1 - 20 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17038 3' -53.9 NC_004333.2 + 10504 0.66 0.769287
Target:  5'- -gGCCGGCcgacgagcGGGUcGGGCG-CGCGCUc -3'
miRNA:   3'- uaCGGCCGc-------UCCAaUUUGCuGUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 33446 0.66 0.769287
Target:  5'- -aGuCCGGCagcauuGGc--AGCGGCGCGCCg -3'
miRNA:   3'- uaC-GGCCGcu----CCaauUUGCUGUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 44386 0.66 0.769287
Target:  5'- cUGCuCGGCGGcgcgugcgcGGUacAACGGCcUGCCg -3'
miRNA:   3'- uACG-GCCGCU---------CCAauUUGCUGuGCGG- -5'
17038 3' -53.9 NC_004333.2 + 47912 0.66 0.767216
Target:  5'- cGUGCuCGGCGGcGUgacgaccacaucGAACGGCACGgCg -3'
miRNA:   3'- -UACG-GCCGCUcCAa-----------UUUGCUGUGCgG- -5'
17038 3' -53.9 NC_004333.2 + 38794 0.66 0.766178
Target:  5'- aAUGCCGGgcgccgaggacaaCGAGGaagaaggcccGACGccGCGCGCCg -3'
miRNA:   3'- -UACGGCC-------------GCUCCaau-------UUGC--UGUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 35798 0.66 0.758875
Target:  5'- -cGCCgGGCGGGGcgcGGGCGG-GCGCUa -3'
miRNA:   3'- uaCGG-CCGCUCCaa-UUUGCUgUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 15501 0.66 0.758875
Target:  5'- cUGCUcGCGGcGGUcaccGGCGGCGCGUCa -3'
miRNA:   3'- uACGGcCGCU-CCAau--UUGCUGUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 28846 0.66 0.758875
Target:  5'- cGUGCCGGCugcGUucgUAGcCGGCGCGCUc -3'
miRNA:   3'- -UACGGCCGcucCA---AUUuGCUGUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 44427 0.66 0.758875
Target:  5'- -cGCUGGCu-GGUgcguGCGAgGCGCUc -3'
miRNA:   3'- uaCGGCCGcuCCAauu-UGCUgUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 9039 0.66 0.758875
Target:  5'- cUGCCuuuGGCGAccu---GCGACACGUCg -3'
miRNA:   3'- uACGG---CCGCUccaauuUGCUGUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 9790 0.66 0.758875
Target:  5'- -gGCCGGCGucacgccGGcgcaccCGACACGCg -3'
miRNA:   3'- uaCGGCCGCu------CCaauuu-GCUGUGCGg -5'
17038 3' -53.9 NC_004333.2 + 48084 0.66 0.748329
Target:  5'- gGUGCCGaCGAGGcgcAGGCGGCAa-CCg -3'
miRNA:   3'- -UACGGCcGCUCCaa-UUUGCUGUgcGG- -5'
17038 3' -53.9 NC_004333.2 + 720 0.66 0.748329
Target:  5'- -cGCCGGCGc-GUUGcuaguCGAUGCGUCg -3'
miRNA:   3'- uaCGGCCGCucCAAUuu---GCUGUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 43582 0.66 0.741941
Target:  5'- cUGCCGGCGcGGccguucauggaaaAGACGAUugccgaccgcaGCGCCg -3'
miRNA:   3'- uACGGCCGCuCCaa-----------UUUGCUG-----------UGCGG- -5'
17038 3' -53.9 NC_004333.2 + 7469 0.66 0.738731
Target:  5'- -cGCCGGUGAcgaucgcggcgaucgGGUUGGuguucuuugcggucGCGAgUGCGCCg -3'
miRNA:   3'- uaCGGCCGCU---------------CCAAUU--------------UGCU-GUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 19791 0.66 0.737659
Target:  5'- cGUGCCGcGCGuuGagu-GCGAUGCGCUg -3'
miRNA:   3'- -UACGGC-CGCucCaauuUGCUGUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 11288 0.66 0.737659
Target:  5'- uUGCCGcGCGcuGUUGAACu--GCGCCg -3'
miRNA:   3'- uACGGC-CGCucCAAUUUGcugUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 38376 0.66 0.737659
Target:  5'- cUGUCGcGUGucGGGUgcgccGGCGugACGCCg -3'
miRNA:   3'- uACGGC-CGC--UCCAau---UUGCugUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 14818 0.66 0.737659
Target:  5'- -aGCaGGCGuuccacGACGGCGCGCCg -3'
miRNA:   3'- uaCGgCCGCuccaauUUGCUGUGCGG- -5'
17038 3' -53.9 NC_004333.2 + 8163 0.66 0.737659
Target:  5'- -cGCCGcGCGAGuuccgUGAucaguccuACGAaCGCGCCa -3'
miRNA:   3'- uaCGGC-CGCUCca---AUU--------UGCU-GUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.