miRNA display CGI


Results 1 - 20 of 261 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17039 3' -54.9 NC_004333.2 + 9109 0.66 0.701475
Target:  5'- aCGGCGcacgagucGCGCGuacUCGCcguccgGCUCAACgaaGCGCg -3'
miRNA:   3'- aGUCGU--------CGCGU---AGCG------UGAGUUG---CGCG- -5'
17039 3' -54.9 NC_004333.2 + 17519 0.66 0.701475
Target:  5'- gCuGCAGCcgGUCGCACUguccgaagCGAuCGCGCa -3'
miRNA:   3'- aGuCGUCGcgUAGCGUGA--------GUU-GCGCG- -5'
17039 3' -54.9 NC_004333.2 + 14092 0.66 0.701475
Target:  5'- --uGCAGCGCgAUCGuCAUgccgUCGACGCu- -3'
miRNA:   3'- aguCGUCGCG-UAGC-GUG----AGUUGCGcg -5'
17039 3' -54.9 NC_004333.2 + 41606 0.66 0.701475
Target:  5'- aCuGCGGCcCA-CGCGCUCGcuCGUGCu -3'
miRNA:   3'- aGuCGUCGcGUaGCGUGAGUu-GCGCG- -5'
17039 3' -54.9 NC_004333.2 + 22188 0.66 0.701475
Target:  5'- cCGGCGGCGguUCGgCggcugcggccuGCUCGAUGC-Cg -3'
miRNA:   3'- aGUCGUCGCguAGC-G-----------UGAGUUGCGcG- -5'
17039 3' -54.9 NC_004333.2 + 20443 0.66 0.701475
Target:  5'- uUCGGCGGCGCGaagccUGCGCcggUCGugACGCaGCc -3'
miRNA:   3'- -AGUCGUCGCGUa----GCGUG---AGU--UGCG-CG- -5'
17039 3' -54.9 NC_004333.2 + 29134 0.66 0.701475
Target:  5'- gUCAGCAuccGC-CAUCGCA-UCGGCGUaGCc -3'
miRNA:   3'- -AGUCGU---CGcGUAGCGUgAGUUGCG-CG- -5'
17039 3' -54.9 NC_004333.2 + 13140 0.66 0.701475
Target:  5'- gCAGgaCAGCGCGUCaCGCcgaugguguUCGGCGCGa -3'
miRNA:   3'- aGUC--GUCGCGUAGcGUG---------AGUUGCGCg -5'
17039 3' -54.9 NC_004333.2 + 9047 0.66 0.700375
Target:  5'- aUCGGCAagccgauGC-CGUCGCGCaugUCAGCGuCGUu -3'
miRNA:   3'- -AGUCGU-------CGcGUAGCGUG---AGUUGC-GCG- -5'
17039 3' -54.9 NC_004333.2 + 28522 0.66 0.690446
Target:  5'- uUCGGgAGUGC---GCGC-CGACGCGUg -3'
miRNA:   3'- -AGUCgUCGCGuagCGUGaGUUGCGCG- -5'
17039 3' -54.9 NC_004333.2 + 3562 0.66 0.690446
Target:  5'- --cGCAGCGCGUCGgccgacCACaUAGUGCGCc -3'
miRNA:   3'- aguCGUCGCGUAGC------GUGaGUUGCGCG- -5'
17039 3' -54.9 NC_004333.2 + 32522 0.66 0.690446
Target:  5'- cCGGaAGCGUuugccgacGUCGCGCg--GCGCGCu -3'
miRNA:   3'- aGUCgUCGCG--------UAGCGUGaguUGCGCG- -5'
17039 3' -54.9 NC_004333.2 + 25571 0.66 0.690446
Target:  5'- aUCAGCuGCGCAaacaGCGCcugCcACGCaGCg -3'
miRNA:   3'- -AGUCGuCGCGUag--CGUGa--GuUGCG-CG- -5'
17039 3' -54.9 NC_004333.2 + 11427 0.66 0.690446
Target:  5'- --cGCAGCaCGUCGCcUUCGAC-CGCu -3'
miRNA:   3'- aguCGUCGcGUAGCGuGAGUUGcGCG- -5'
17039 3' -54.9 NC_004333.2 + 35180 0.66 0.690446
Target:  5'- cCGGC-GCGaaCGUCGauUugUCGAUGCGCg -3'
miRNA:   3'- aGUCGuCGC--GUAGC--GugAGUUGCGCG- -5'
17039 3' -54.9 NC_004333.2 + 45543 0.66 0.690446
Target:  5'- cCGGCaAGCGCGaugaaccgCGCGgUCGGucuguCGCGCa -3'
miRNA:   3'- aGUCG-UCGCGUa-------GCGUgAGUU-----GCGCG- -5'
17039 3' -54.9 NC_004333.2 + 23625 0.66 0.690446
Target:  5'- aUCAGCAGcCGacgAUCGCcaauCUCAACauuaGCGUu -3'
miRNA:   3'- -AGUCGUC-GCg--UAGCGu---GAGUUG----CGCG- -5'
17039 3' -54.9 NC_004333.2 + 9708 0.66 0.690446
Target:  5'- uUCGGCGcacGCGguUCGCGa--AACGcCGCg -3'
miRNA:   3'- -AGUCGU---CGCguAGCGUgagUUGC-GCG- -5'
17039 3' -54.9 NC_004333.2 + 32054 0.66 0.683799
Target:  5'- gUCAGCGGaaagaacguguccgaCGCGacgaUCGCAUagaucggcgUCGGCGCGUu -3'
miRNA:   3'- -AGUCGUC---------------GCGU----AGCGUG---------AGUUGCGCG- -5'
17039 3' -54.9 NC_004333.2 + 46533 0.66 0.679358
Target:  5'- --cGCAGCGCAUucagggcuaCGcCGC-CGACGaCGCa -3'
miRNA:   3'- aguCGUCGCGUA---------GC-GUGaGUUGC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.