miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17039 5' -58.6 NC_004333.2 + 40014 0.66 0.510298
Target:  5'- ---cGCGaUGGAcGCGGCCGAccugUCGCc- -3'
miRNA:   3'- ggcaCGCaACCU-CGCCGGCU----AGCGca -5'
17039 5' -58.6 NC_004333.2 + 8984 0.66 0.510298
Target:  5'- gCCGUGCGcgGcGGCGaCCGA-CGCGg -3'
miRNA:   3'- -GGCACGCaaCcUCGCcGGCUaGCGCa -5'
17039 5' -58.6 NC_004333.2 + 44955 0.67 0.470156
Target:  5'- cCCG-GCGUcaucGGGGCGGgCGG-CGCGc -3'
miRNA:   3'- -GGCaCGCAa---CCUCGCCgGCUaGCGCa -5'
17039 5' -58.6 NC_004333.2 + 47473 0.67 0.460371
Target:  5'- aCG-GCGcucgcgGGcGGCGGCaCGAUCGCGc -3'
miRNA:   3'- gGCaCGCaa----CC-UCGCCG-GCUAGCGCa -5'
17039 5' -58.6 NC_004333.2 + 3164 0.67 0.450695
Target:  5'- aCGcGCGgucGAGCGGCCGGacagCGCGc -3'
miRNA:   3'- gGCaCGCaacCUCGCCGGCUa---GCGCa -5'
17039 5' -58.6 NC_004333.2 + 10822 0.69 0.352323
Target:  5'- aCCGcguUGCGcacgUGGAGCGGCCGcaaGUaCGCu- -3'
miRNA:   3'- -GGC---ACGCa---ACCUCGCCGGC---UA-GCGca -5'
17039 5' -58.6 NC_004333.2 + 20421 0.7 0.305447
Target:  5'- aCGUGCGccugacgGGcucGGCGGCCGAccagauUCGCGc -3'
miRNA:   3'- gGCACGCaa-----CC---UCGCCGGCU------AGCGCa -5'
17039 5' -58.6 NC_004333.2 + 36345 0.71 0.276942
Target:  5'- aCCG-GCGcaagcUGGAGCGcGCCG-UCGCGc -3'
miRNA:   3'- -GGCaCGCa----ACCUCGC-CGGCuAGCGCa -5'
17039 5' -58.6 NC_004333.2 + 21207 0.73 0.209508
Target:  5'- aCGUGCGcaucaaUGG-GCGGCCG-UCGCGc -3'
miRNA:   3'- gGCACGCa-----ACCuCGCCGGCuAGCGCa -5'
17039 5' -58.6 NC_004333.2 + 2484 0.74 0.179038
Target:  5'- gCGUGCGUUGuGGUaGCUGAUCGCGc -3'
miRNA:   3'- gGCACGCAACcUCGcCGGCUAGCGCa -5'
17039 5' -58.6 NC_004333.2 + 28413 1.08 0.000538
Target:  5'- cCCGUGCGUUGGAGCGGCCGAUCGCGUc -3'
miRNA:   3'- -GGCACGCAACCUCGCCGGCUAGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.