miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 39045 0.66 0.988071
Target:  5'- gCGUC-CCGCgGCGACAGuugacgcagguccguCGCGCccacGCCg -3'
miRNA:   3'- -GCAGcGGCG-CGUUGUUu--------------GCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 208080 0.66 0.987926
Target:  5'- gCGUCGgguaCCGCuGCcGCAGAUggGCGC-ACCg -3'
miRNA:   3'- -GCAGC----GGCG-CGuUGUUUG--CGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 1636 0.66 0.987926
Target:  5'- gCGUgGgcaccCCGCGCGc--GACGCuGCUGCCu -3'
miRNA:   3'- -GCAgC-----GGCGCGUuguUUGCG-CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 16563 0.66 0.987926
Target:  5'- uGUaCGUCaCGCuGCAAcUGCGUUGCCg -3'
miRNA:   3'- gCA-GCGGcGCGuUGUUuGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 39635 0.66 0.987926
Target:  5'- uCGUCGCCcguGUGCcGCGGGCGacacgcaGCUGgCu -3'
miRNA:   3'- -GCAGCGG---CGCGuUGUUUGCg------CGAUgG- -5'
1704 3' -54.1 NC_001347.2 + 31941 0.66 0.987926
Target:  5'- -aUCGCCaucUGUAugGCGAugGUGCUGCUg -3'
miRNA:   3'- gcAGCGGc--GCGU--UGUUugCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 198975 0.66 0.987926
Target:  5'- gGUgaGCCGCgGCGAuuCGGGCGUGCcgcgaUGCCg -3'
miRNA:   3'- gCAg-CGGCG-CGUU--GUUUGCGCG-----AUGG- -5'
1704 3' -54.1 NC_001347.2 + 76901 0.66 0.987926
Target:  5'- gGUU-CUGCGCGGCGAucacCGUGgUACCg -3'
miRNA:   3'- gCAGcGGCGCGUUGUUu---GCGCgAUGG- -5'
1704 3' -54.1 NC_001347.2 + 53478 0.66 0.987926
Target:  5'- -uUCGUCGU-CAACGAuggcACGCGUUAUCa -3'
miRNA:   3'- gcAGCGGCGcGUUGUU----UGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 199341 0.66 0.987926
Target:  5'- -uUCGuuGagGCGGCGGAgGUGCUGCa -3'
miRNA:   3'- gcAGCggCg-CGUUGUUUgCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 158092 0.66 0.986408
Target:  5'- aG-CGCCGCGCu----GCGCgGCgGCCu -3'
miRNA:   3'- gCaGCGGCGCGuuguuUGCG-CGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 20320 0.66 0.986408
Target:  5'- gGUCGCUGCcaCAGCAGcgGCGUcGCCc -3'
miRNA:   3'- gCAGCGGCGc-GUUGUUugCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 184226 0.66 0.986408
Target:  5'- gGUCGCUagcguGuCGCAGCGuuCGCcgccGUUGCCg -3'
miRNA:   3'- gCAGCGG-----C-GCGUUGUuuGCG----CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 10812 0.66 0.986408
Target:  5'- uGUaCGCCaucaGCGCGAUggGCGCcagGUaGCCg -3'
miRNA:   3'- gCA-GCGG----CGCGUUGuuUGCG---CGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 161983 0.66 0.986408
Target:  5'- aGUcCGCCGCuCAuuuuGugGCGCgugACCa -3'
miRNA:   3'- gCA-GCGGCGcGUugu-UugCGCGa--UGG- -5'
1704 3' -54.1 NC_001347.2 + 153861 0.66 0.986408
Target:  5'- uCGUgUGCCGCGCcgAGCGgcGACGUGCa--- -3'
miRNA:   3'- -GCA-GCGGCGCG--UUGU--UUGCGCGaugg -5'
1704 3' -54.1 NC_001347.2 + 128544 0.66 0.986408
Target:  5'- -aUCGaCCuGCGCAccgagcACAGcuACGCGCUcuggGCCa -3'
miRNA:   3'- gcAGC-GG-CGCGU------UGUU--UGCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 56440 0.66 0.986408
Target:  5'- uCGUUGCUGcCGC-----GCGCGCcACCa -3'
miRNA:   3'- -GCAGCGGC-GCGuuguuUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 176538 0.66 0.986408
Target:  5'- aCGUUGUugaucgaagUGgGUAACAAcACGCGCcGCCa -3'
miRNA:   3'- -GCAGCG---------GCgCGUUGUU-UGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 150494 0.66 0.986408
Target:  5'- uGUCGCCGCccuuGCAAUc--UGCGCcguCCa -3'
miRNA:   3'- gCAGCGGCG----CGUUGuuuGCGCGau-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.