Results 61 - 80 of 247 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1704 | 3' | -54.1 | NC_001347.2 | + | 22190 | 0.67 | 0.974045 |
Target: 5'- uCGU-GCCGCuccaucGCAGCc-ACGCGCUggugGCCg -3' miRNA: 3'- -GCAgCGGCG------CGUUGuuUGCGCGA----UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 199697 | 0.67 | 0.974045 |
Target: 5'- uGUCGCCG-GCgAGCcccgAGGCGCGCccGCUg -3' miRNA: 3'- gCAGCGGCgCG-UUG----UUUGCGCGa-UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 80724 | 0.67 | 0.972196 |
Target: 5'- aGUCGCCaccggcuGCGCAGCAAcagccaccuaacgccGCGgGCgGCg -3' miRNA: 3'- gCAGCGG-------CGCGUUGUU---------------UGCgCGaUGg -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 150327 | 0.67 | 0.971375 |
Target: 5'- -cUCGCUGCugGACGAGUGCGcCUGCCg -3' miRNA: 3'- gcAGCGGCGcgUUGUUUGCGC-GAUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 166620 | 0.67 | 0.971375 |
Target: 5'- cCGUcaCGCCGUccucCGAgAGGCGCGCccgGCCa -3' miRNA: 3'- -GCA--GCGGCGc---GUUgUUUGCGCGa--UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 196734 | 0.67 | 0.971375 |
Target: 5'- gCGcUGCUGCGCAAgGGACuCGCUcagaACCc -3' miRNA: 3'- -GCaGCGGCGCGUUgUUUGcGCGA----UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 87701 | 0.67 | 0.971375 |
Target: 5'- -cUCGCUGUGCuu---ACGCGCcACCu -3' miRNA: 3'- gcAGCGGCGCGuuguuUGCGCGaUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 86317 | 0.67 | 0.971375 |
Target: 5'- uCGUCGCgagccaGCGCGGCc-ACGCGCg--- -3' miRNA: 3'- -GCAGCGg-----CGCGUUGuuUGCGCGaugg -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 81547 | 0.67 | 0.975061 |
Target: 5'- cCGUCGCCGUcgucacgugGCAGCGgcggcaacagccagcGACGauCGCcGCCg -3' miRNA: 3'- -GCAGCGGCG---------CGUUGU---------------UUGC--GCGaUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 82513 | 0.67 | 0.97653 |
Target: 5'- cCGagGCCaGCGCAGCGuagcuGGCGCGaUGCa -3' miRNA: 3'- -GCagCGG-CGCGUUGU-----UUGCGCgAUGg -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 6886 | 0.67 | 0.978835 |
Target: 5'- aCGUUGCCGaaGUAACAuguCGCGUUgacacuggagcGCCg -3' miRNA: 3'- -GCAGCGGCg-CGUUGUuu-GCGCGA-----------UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 48843 | 0.67 | 0.978835 |
Target: 5'- gCGUCaggGCgGUGCGGCGuuCGCGUgcacgcGCCa -3' miRNA: 3'- -GCAG---CGgCGCGUUGUuuGCGCGa-----UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 39157 | 0.67 | 0.978835 |
Target: 5'- cCG-CGUCGCGCuGCGaccacuugcgcAugGCGCgGCCc -3' miRNA: 3'- -GCaGCGGCGCGuUGU-----------UugCGCGaUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 180052 | 0.67 | 0.978835 |
Target: 5'- uGUgGCgGCggGCAGCAu-CGCGUUGCUc -3' miRNA: 3'- gCAgCGgCG--CGUUGUuuGCGCGAUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 93992 | 0.67 | 0.978835 |
Target: 5'- gGUCGUgGC-CAACug--GUGCUGCCg -3' miRNA: 3'- gCAGCGgCGcGUUGuuugCGCGAUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 115521 | 0.67 | 0.978835 |
Target: 5'- ---gGCCGCGCu---AGCGgGCUGCa -3' miRNA: 3'- gcagCGGCGCGuuguUUGCgCGAUGg -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 86221 | 0.67 | 0.97653 |
Target: 5'- uCGUCGCacCGCuCGGCc-ACGCGCU-CCa -3' miRNA: 3'- -GCAGCG--GCGcGUUGuuUGCGCGAuGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 161646 | 0.67 | 0.97653 |
Target: 5'- uGUCGaCC-CGCGGCGugGACGCGCcguugGCg -3' miRNA: 3'- gCAGC-GGcGCGUUGU--UUGCGCGa----UGg -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 71711 | 0.67 | 0.97653 |
Target: 5'- -aUCGCCGC-CGACccGCGUGUgcccUGCCu -3' miRNA: 3'- gcAGCGGCGcGUUGuuUGCGCG----AUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 68557 | 0.67 | 0.971375 |
Target: 5'- -aUCGCCGUccacGCAGuugacCAGACGCGCggUAUCg -3' miRNA: 3'- gcAGCGGCG----CGUU-----GUUUGCGCG--AUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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