miRNA display CGI


Results 81 - 100 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 180052 0.67 0.978835
Target:  5'- uGUgGCgGCggGCAGCAu-CGCGUUGCUc -3'
miRNA:   3'- gCAgCGgCG--CGUUGUuuGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 93992 0.67 0.978835
Target:  5'- gGUCGUgGC-CAACug--GUGCUGCCg -3'
miRNA:   3'- gCAGCGgCGcGUUGuuugCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 115521 0.67 0.978835
Target:  5'- ---gGCCGCGCu---AGCGgGCUGCa -3'
miRNA:   3'- gcagCGGCGCGuuguUUGCgCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 86221 0.67 0.97653
Target:  5'- uCGUCGCacCGCuCGGCc-ACGCGCU-CCa -3'
miRNA:   3'- -GCAGCG--GCGcGUUGuuUGCGCGAuGG- -5'
1704 3' -54.1 NC_001347.2 + 161646 0.67 0.97653
Target:  5'- uGUCGaCC-CGCGGCGugGACGCGCcguugGCg -3'
miRNA:   3'- gCAGC-GGcGCGUUGU--UUGCGCGa----UGg -5'
1704 3' -54.1 NC_001347.2 + 113218 0.67 0.974045
Target:  5'- uGUCGCCcgaacGCuCGGCGGACGcCGCUuuaauaucgcacGCCg -3'
miRNA:   3'- gCAGCGG-----CGcGUUGUUUGC-GCGA------------UGG- -5'
1704 3' -54.1 NC_001347.2 + 127801 0.67 0.974045
Target:  5'- cCGUCGCCGUacacccCAGCGuuuuACGCGCcgugGCg -3'
miRNA:   3'- -GCAGCGGCGc-----GUUGUu---UGCGCGa---UGg -5'
1704 3' -54.1 NC_001347.2 + 22190 0.67 0.974045
Target:  5'- uCGU-GCCGCuccaucGCAGCc-ACGCGCUggugGCCg -3'
miRNA:   3'- -GCAgCGGCG------CGUUGuuUGCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 199697 0.67 0.974045
Target:  5'- uGUCGCCG-GCgAGCcccgAGGCGCGCccGCUg -3'
miRNA:   3'- gCAGCGGCgCG-UUG----UUUGCGCGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 81547 0.67 0.975061
Target:  5'- cCGUCGCCGUcgucacgugGCAGCGgcggcaacagccagcGACGauCGCcGCCg -3'
miRNA:   3'- -GCAGCGGCG---------CGUUGU---------------UUGC--GCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 82513 0.67 0.97653
Target:  5'- cCGagGCCaGCGCAGCGuagcuGGCGCGaUGCa -3'
miRNA:   3'- -GCagCGG-CGCGUUGU-----UUGCGCgAUGg -5'
1704 3' -54.1 NC_001347.2 + 71711 0.67 0.97653
Target:  5'- -aUCGCCGC-CGACccGCGUGUgcccUGCCu -3'
miRNA:   3'- gcAGCGGCGcGUUGuuUGCGCG----AUGG- -5'
1704 3' -54.1 NC_001347.2 + 114414 0.68 0.965454
Target:  5'- ---gGCCGUGUucgAugAAACGCGC-GCCg -3'
miRNA:   3'- gcagCGGCGCG---UugUUUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 128106 0.68 0.965454
Target:  5'- --cCGCCGCaCGACcugccCGCGUUGCCc -3'
miRNA:   3'- gcaGCGGCGcGUUGuuu--GCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 78671 0.68 0.965454
Target:  5'- gGagGCCGUGCGcaAGGCGCGCgACg -3'
miRNA:   3'- gCagCGGCGCGUugUUUGCGCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 153677 0.68 0.965454
Target:  5'- uGUUGCCgGCGCAcuggggucGCAGAaaaaGUGCUugUa -3'
miRNA:   3'- gCAGCGG-CGCGU--------UGUUUg---CGCGAugG- -5'
1704 3' -54.1 NC_001347.2 + 26598 0.68 0.965454
Target:  5'- cCGUCucagcuCCGUGUGGCGuGACGCGCUuuuuACCu -3'
miRNA:   3'- -GCAGc-----GGCGCGUUGU-UUGCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 188627 0.68 0.965454
Target:  5'- cCGUCGggacaGCGCGugGGACGUGagGCCg -3'
miRNA:   3'- -GCAGCgg---CGCGUugUUUGCGCgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 110539 0.68 0.965454
Target:  5'- -aUCgGCCGCGaauGgAAGCGCGC-GCCa -3'
miRNA:   3'- gcAG-CGGCGCgu-UgUUUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 77959 0.68 0.965454
Target:  5'- ---aGCUGCGCGGCAAGCacaucCGCUugUa -3'
miRNA:   3'- gcagCGGCGCGUUGUUUGc----GCGAugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.