miRNA display CGI


Results 61 - 80 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 39763 0.71 0.850672
Target:  5'- aGgaaGaCGCGCGGCAGGCGCG-UACCa -3'
miRNA:   3'- gCag-CgGCGCGUUGUUUGCGCgAUGG- -5'
1704 3' -54.1 NC_001347.2 + 896 0.71 0.872238
Target:  5'- uGUCGCCGCGCcccccgccccuugGucGCGGcCGCGggGCCg -3'
miRNA:   3'- gCAGCGGCGCG-------------U--UGUUuGCGCgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 89643 0.71 0.860545
Target:  5'- uCGUCGCCG-GCGucaucgacccggccuGCuGACGCGCUcgucucgACCg -3'
miRNA:   3'- -GCAGCGGCgCGU---------------UGuUUGCGCGA-------UGG- -5'
1704 3' -54.1 NC_001347.2 + 75450 0.71 0.858295
Target:  5'- --aCGUCGgGCAGCucAACGCGC-GCCa -3'
miRNA:   3'- gcaGCGGCgCGUUGu-UUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 156955 0.71 0.858295
Target:  5'- cCGUCaUCGUgGUGGCGAGCGCGCUccggGCCa -3'
miRNA:   3'- -GCAGcGGCG-CGUUGUUUGCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 210159 0.71 0.850672
Target:  5'- cCGUCGCCGCacuGCGuucuCAcuCGCGUcgUGCCu -3'
miRNA:   3'- -GCAGCGGCG---CGUu---GUuuGCGCG--AUGG- -5'
1704 3' -54.1 NC_001347.2 + 151071 0.71 0.858295
Target:  5'- -aUCGCCGC-CAGCAucACGCGC-AUCg -3'
miRNA:   3'- gcAGCGGCGcGUUGUu-UGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 189025 0.71 0.865724
Target:  5'- ---gGCCGCGCGA---ACGCGCguggGCCc -3'
miRNA:   3'- gcagCGGCGCGUUguuUGCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 100878 0.71 0.856028
Target:  5'- gCGgCGCgGCGCAGCGccggccauucuccgGGuCGCGCUGCUu -3'
miRNA:   3'- -GCaGCGgCGCGUUGU--------------UU-GCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 201496 0.7 0.913584
Target:  5'- gCGUCGCUggcgcuugguGCGCGACGAaggacgggaugcacaGCGUcuggccaGCUACCu -3'
miRNA:   3'- -GCAGCGG----------CGCGUUGUU---------------UGCG-------CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 222423 0.7 0.917555
Target:  5'- gCGUCGCCGCGUcuCGuuCGuCGagGCCg -3'
miRNA:   3'- -GCAGCGGCGCGuuGUuuGC-GCgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 770 0.7 0.886784
Target:  5'- uGUCGCC-CGCGGCAcACGgGCgACg -3'
miRNA:   3'- gCAGCGGcGCGUUGUuUGCgCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 144739 0.7 0.917555
Target:  5'- -cUCGCgaggugaaCGUGC-GCAAACGCGcCUACCu -3'
miRNA:   3'- gcAGCG--------GCGCGuUGUUUGCGC-GAUGG- -5'
1704 3' -54.1 NC_001347.2 + 38468 0.7 0.893381
Target:  5'- --cCGCCGCGCAGCccagccacCGCGCgggcagcACCg -3'
miRNA:   3'- gcaGCGGCGCGUUGuuu-----GCGCGa------UGG- -5'
1704 3' -54.1 NC_001347.2 + 189950 0.7 0.904092
Target:  5'- cCGUCGUCuacggccaaaagcaGCGUAuCGAAUGCGCcGCCu -3'
miRNA:   3'- -GCAGCGG--------------CGCGUuGUUUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 191975 0.7 0.90531
Target:  5'- uGUCGCCGCcaccgcagcggcgGCGACGGACG-GCgGCg -3'
miRNA:   3'- gCAGCGGCG-------------CGUUGUUUGCgCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 78568 0.7 0.911848
Target:  5'- gCGUgCGCgaacUGCGCGACcugcucACGCGCUACg -3'
miRNA:   3'- -GCA-GCG----GCGCGUUGuu----UGCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 53645 0.7 0.905916
Target:  5'- cCGUCGCgCGCGCAGgGAAuuuugaaaacCGCGCg--- -3'
miRNA:   3'- -GCAGCG-GCGCGUUgUUU----------GCGCGaugg -5'
1704 3' -54.1 NC_001347.2 + 163303 0.7 0.886784
Target:  5'- aCGUCgGUCGCgGCGACucguCGCGC-GCCa -3'
miRNA:   3'- -GCAG-CGGCG-CGUUGuuu-GCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 106005 0.7 0.905916
Target:  5'- uGUCGCC-CGaCGACGAGauCGCGCgGCUg -3'
miRNA:   3'- gCAGCGGcGC-GUUGUUU--GCGCGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.