miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 93784 1.11 0.005491
Target:  5'- uCGUCGCCGCGCAACAAACGCGCUACCc -3'
miRNA:   3'- -GCAGCGGCGCGUUGUUUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 196903 0.86 0.204015
Target:  5'- uGUCGCUGCGCAuCAAGCGCgaGCUGCUg -3'
miRNA:   3'- gCAGCGGCGCGUuGUUUGCG--CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 66208 0.82 0.320661
Target:  5'- cCGUCGCCGCGCAACAccaccCGCGCcuucgugggcaacgACCa -3'
miRNA:   3'- -GCAGCGGCGCGUUGUuu---GCGCGa-------------UGG- -5'
1704 3' -54.1 NC_001347.2 + 117126 0.81 0.386431
Target:  5'- aCGUCGUCGCGCAccuggcccgACAGACGCuCUugCa -3'
miRNA:   3'- -GCAGCGGCGCGU---------UGUUUGCGcGAugG- -5'
1704 3' -54.1 NC_001347.2 + 20458 0.8 0.394634
Target:  5'- cCGUCGCCaccaugcagGCGCAggagGCuAACGCGCUGCUg -3'
miRNA:   3'- -GCAGCGG---------CGCGU----UGuUUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 1255 0.79 0.446139
Target:  5'- gGUCGCaGCGCGACGcgggcACGCuGCUGCCg -3'
miRNA:   3'- gCAGCGgCGCGUUGUu----UGCG-CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 2485 0.79 0.455084
Target:  5'- gCG-CGCCGCGCugUggGCGCGCgaGCCg -3'
miRNA:   3'- -GCaGCGGCGCGuuGuuUGCGCGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 193180 0.78 0.491791
Target:  5'- gCGUCgGCCGCGUcGCAAACGCuGCUugguACCc -3'
miRNA:   3'- -GCAG-CGGCGCGuUGUUUGCG-CGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 81484 0.78 0.520195
Target:  5'- gCGUCGUCGCuCGGCGggUGCGC-ACCg -3'
miRNA:   3'- -GCAGCGGCGcGUUGUuuGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 102989 0.77 0.578728
Target:  5'- gGUCGCCGUGCuGCGucugguAACGCGCaucucagcgcUGCCg -3'
miRNA:   3'- gCAGCGGCGCGuUGU------UUGCGCG----------AUGG- -5'
1704 3' -54.1 NC_001347.2 + 82573 0.77 0.578728
Target:  5'- gGUCaCCGCGCAccACGAACGUGUgaaGCCg -3'
miRNA:   3'- gCAGcGGCGCGU--UGUUUGCGCGa--UGG- -5'
1704 3' -54.1 NC_001347.2 + 156628 0.77 0.578728
Target:  5'- gGUCGCCGCugGCGGC--GC-CGCUGCCg -3'
miRNA:   3'- gCAGCGGCG--CGUUGuuUGcGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 165663 0.76 0.598592
Target:  5'- gCGcUCaGCCGCGCGucCAGACGCGC-GCCc -3'
miRNA:   3'- -GC-AG-CGGCGCGUu-GUUUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 202991 0.76 0.598592
Target:  5'- gCGUCGCUGC-UGACGAACGCGUcuggcugugUGCCg -3'
miRNA:   3'- -GCAGCGGCGcGUUGUUUGCGCG---------AUGG- -5'
1704 3' -54.1 NC_001347.2 + 65971 0.76 0.598592
Target:  5'- gGUUGCCuggacgccuggGCGCGACGcGGCGUGCUGCUg -3'
miRNA:   3'- gCAGCGG-----------CGCGUUGU-UUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 126038 0.76 0.612556
Target:  5'- -uUCGCCGUgaacaacgaaacgcuGCAGCucuCGCGCUACCu -3'
miRNA:   3'- gcAGCGGCG---------------CGUUGuuuGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 1369 0.76 0.615553
Target:  5'- uGUCGCCGCGgGAC--GCGUggaucguacuggugGCUACCg -3'
miRNA:   3'- gCAGCGGCGCgUUGuuUGCG--------------CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 88352 0.76 0.638547
Target:  5'- cCGUCGCCGC-UGGCG---GCGCUGCCg -3'
miRNA:   3'- -GCAGCGGCGcGUUGUuugCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 153066 0.75 0.648543
Target:  5'- uCGUUGCCGUacgGCGagaugucgagGCAggUGUGCUGCCg -3'
miRNA:   3'- -GCAGCGGCG---CGU----------UGUuuGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 208052 0.75 0.658525
Target:  5'- aGUCGCgGCGUucguuGGCGCcGCUGCCg -3'
miRNA:   3'- gCAGCGgCGCGuugu-UUGCG-CGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.