miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 159901 0.75 0.668488
Target:  5'- aGUCGCgGUcucGCGACGuguauucgagguGGCGCGCUACUa -3'
miRNA:   3'- gCAGCGgCG---CGUUGU------------UUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 2454 0.75 0.678423
Target:  5'- ---gGCCGCGCug-GGACGCGCUGCa -3'
miRNA:   3'- gcagCGGCGCGuugUUUGCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 168974 0.75 0.698174
Target:  5'- -uUCGagGCGCAGcCGGGCGCGCUGCUc -3'
miRNA:   3'- gcAGCggCGCGUU-GUUUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 109807 0.74 0.707975
Target:  5'- --cCGCUGCGCAACccAAACGuCGCcGCCa -3'
miRNA:   3'- gcaGCGGCGCGUUG--UUUGC-GCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 16807 0.74 0.727384
Target:  5'- gCGUCGCCGCuacgAACAcggucuacGGCGCGCgGCCa -3'
miRNA:   3'- -GCAGCGGCGcg--UUGU--------UUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 77437 0.74 0.727384
Target:  5'- --gUGCUGCGCGACccguGCGUGCUGCg -3'
miRNA:   3'- gcaGCGGCGCGUUGuu--UGCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 90982 0.74 0.736975
Target:  5'- gCGaCGCUGUGCcGCAa--GCGCUACCa -3'
miRNA:   3'- -GCaGCGGCGCGuUGUuugCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 2403 0.74 0.746479
Target:  5'- cCGagGCCGCGCGGCG-GC-UGCUGCCc -3'
miRNA:   3'- -GCagCGGCGCGUUGUuUGcGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 197149 0.73 0.755887
Target:  5'- uCGUCGCCGCcccGgGGCccucggUGCGCUACCg -3'
miRNA:   3'- -GCAGCGGCG---CgUUGuuu---GCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 158710 0.73 0.765191
Target:  5'- aCGUCGgcggccacaUUGUGCAGCAGGCGCGCgGCg -3'
miRNA:   3'- -GCAGC---------GGCGCGUUGUUUGCGCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 8375 0.73 0.77072
Target:  5'- aGUUGCCGCGCc-CAAAauucacgcguaaaGCGUUGCCg -3'
miRNA:   3'- gCAGCGGCGCGuuGUUUg------------CGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 81386 0.73 0.781648
Target:  5'- aGUCGCgCGCGCGuACAcacuuggccagcACGCGCUcgACCa -3'
miRNA:   3'- gCAGCG-GCGCGU-UGUu-----------UGCGCGA--UGG- -5'
1704 3' -54.1 NC_001347.2 + 208878 0.73 0.792391
Target:  5'- gCGUCGuuGUGUAACAccuGAC-CGCUGCg -3'
miRNA:   3'- -GCAGCggCGCGUUGU---UUGcGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 153368 0.73 0.792391
Target:  5'- gCGUCGuUCGCGCGGCG--UGCGCacGCCg -3'
miRNA:   3'- -GCAGC-GGCGCGUUGUuuGCGCGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 105966 0.73 0.792391
Target:  5'- gCGUCggcgaGCCGCGC-ACGccCGCGCgGCCg -3'
miRNA:   3'- -GCAG-----CGGCGCGuUGUuuGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 1320 0.73 0.798568
Target:  5'- --aCGCCGCGCAGCcagaugaacggcguGGGCGCGacggACCu -3'
miRNA:   3'- gcaGCGGCGCGUUG--------------UUUGCGCga--UGG- -5'
1704 3' -54.1 NC_001347.2 + 82406 0.72 0.809849
Target:  5'- gCG-CGCCaacaCGCGGauuAACGCGCUGCCu -3'
miRNA:   3'- -GCaGCGGc---GCGUUgu-UUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 54483 0.72 0.813269
Target:  5'- uGUCGCCgacuaaauucaugucGCGCGAUAGugGUGUUuaucGCCg -3'
miRNA:   3'- gCAGCGG---------------CGCGUUGUUugCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 200614 0.72 0.817508
Target:  5'- gCGUCggGCUGCGCGccgucgagacccuGCAcugcAUGCGCUACCu -3'
miRNA:   3'- -GCAG--CGGCGCGU-------------UGUu---UGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 85213 0.72 0.818351
Target:  5'- ---aGCCG-GCAGugaaAAGCGCGCUACCu -3'
miRNA:   3'- gcagCGGCgCGUUg---UUUGCGCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.