miRNA display CGI


Results 41 - 60 of 247 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 182943 0.72 0.826692
Target:  5'- -cUCGCCGCGCucGCGGGCGUcCgagACCg -3'
miRNA:   3'- gcAGCGGCGCGu-UGUUUGCGcGa--UGG- -5'
1704 3' -54.1 NC_001347.2 + 153211 0.72 0.826692
Target:  5'- uGUCGUgcagguCGUGCAGCGugaggcgcgGGCGCGCgucgGCCg -3'
miRNA:   3'- gCAGCG------GCGCGUUGU---------UUGCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 198393 0.72 0.826692
Target:  5'- gCGg-GUCGCGCAACAGcggauCGCGC-ACCa -3'
miRNA:   3'- -GCagCGGCGCGUUGUUu----GCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 126519 0.72 0.826692
Target:  5'- cCGUCG-CGCGCAACcgcCGCGaCUACa -3'
miRNA:   3'- -GCAGCgGCGCGUUGuuuGCGC-GAUGg -5'
1704 3' -54.1 NC_001347.2 + 2238 0.72 0.834863
Target:  5'- cCGU-GCCGCGCGcCAugcugGugGUGCUGCUg -3'
miRNA:   3'- -GCAgCGGCGCGUuGU-----UugCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 38008 0.72 0.842859
Target:  5'- aGcCGCCGCGCGGCcucggcGGCGgGC-GCCg -3'
miRNA:   3'- gCaGCGGCGCGUUGu-----UUGCgCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 209014 0.72 0.842859
Target:  5'- gGUCGCCGUaagGCAGCAAcUGCGgUgaGCCc -3'
miRNA:   3'- gCAGCGGCG---CGUUGUUuGCGCgA--UGG- -5'
1704 3' -54.1 NC_001347.2 + 169132 0.72 0.842859
Target:  5'- gCG-CGCCGCGCuGCAGugGCuggACCu -3'
miRNA:   3'- -GCaGCGGCGCGuUGUUugCGcgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 103546 0.72 0.842859
Target:  5'- aCGUCGCCaccgaCGC-ACAuACGCcGCUGCUg -3'
miRNA:   3'- -GCAGCGGc----GCGuUGUuUGCG-CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 17334 0.72 0.842859
Target:  5'- gGUUGCCGCGCGu--AugGCcGCcgGCCa -3'
miRNA:   3'- gCAGCGGCGCGUuguUugCG-CGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 183103 0.71 0.849899
Target:  5'- uGUUGCCGCGCAaguuccagcccacGCAccAGCGUGacgaaaguCUGCCg -3'
miRNA:   3'- gCAGCGGCGCGU-------------UGU--UUGCGC--------GAUGG- -5'
1704 3' -54.1 NC_001347.2 + 210159 0.71 0.850672
Target:  5'- cCGUCGCCGCacuGCGuucuCAcuCGCGUcgUGCCu -3'
miRNA:   3'- -GCAGCGGCG---CGUu---GUuuGCGCG--AUGG- -5'
1704 3' -54.1 NC_001347.2 + 39763 0.71 0.850672
Target:  5'- aGgaaGaCGCGCGGCAGGCGCG-UACCa -3'
miRNA:   3'- gCag-CgGCGCGUUGUUUGCGCgAUGG- -5'
1704 3' -54.1 NC_001347.2 + 106924 0.71 0.850672
Target:  5'- aCGUaaaGCCGCGCAuCAcACGgCGUUACa -3'
miRNA:   3'- -GCAg--CGGCGCGUuGUuUGC-GCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 100878 0.71 0.856028
Target:  5'- gCGgCGCgGCGCAGCGccggccauucuccgGGuCGCGCUGCUu -3'
miRNA:   3'- -GCaGCGgCGCGUUGU--------------UU-GCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 75450 0.71 0.858295
Target:  5'- --aCGUCGgGCAGCucAACGCGC-GCCa -3'
miRNA:   3'- gcaGCGGCgCGUUGu-UUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 151071 0.71 0.858295
Target:  5'- -aUCGCCGC-CAGCAucACGCGC-AUCg -3'
miRNA:   3'- gcAGCGGCGcGUUGUu-UGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 64852 0.71 0.858295
Target:  5'- aGUCGCCGU-CAGCGu-CGCuCUACCg -3'
miRNA:   3'- gCAGCGGCGcGUUGUuuGCGcGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 156955 0.71 0.858295
Target:  5'- cCGUCaUCGUgGUGGCGAGCGCGCUccggGCCa -3'
miRNA:   3'- -GCAGcGGCG-CGUUGUUUGCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 195834 0.71 0.858295
Target:  5'- uGUCuggGCCGCGCuuCGAgGCGUGCccuUGCCg -3'
miRNA:   3'- gCAG---CGGCGCGuuGUU-UGCGCG---AUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.