miRNA display CGI


Results 61 - 80 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 89643 0.71 0.860545
Target:  5'- uCGUCGCCG-GCGucaucgacccggccuGCuGACGCGCUcgucucgACCg -3'
miRNA:   3'- -GCAGCGGCgCGU---------------UGuUUGCGCGA-------UGG- -5'
1704 3' -54.1 NC_001347.2 + 142652 0.71 0.865724
Target:  5'- --aCGCCGCGaCAACGGcCGCcGCaGCCa -3'
miRNA:   3'- gcaGCGGCGC-GUUGUUuGCG-CGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 120817 0.71 0.865724
Target:  5'- uGUCuGCCGCuCGGCGAAuccuucucCGCGCUaACCg -3'
miRNA:   3'- gCAG-CGGCGcGUUGUUU--------GCGCGA-UGG- -5'
1704 3' -54.1 NC_001347.2 + 189025 0.71 0.865724
Target:  5'- ---gGCCGCGCGA---ACGCGCguggGCCc -3'
miRNA:   3'- gcagCGGCGCGUUguuUGCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 896 0.71 0.872238
Target:  5'- uGUCGCCGCGCcccccgccccuugGucGCGGcCGCGggGCCg -3'
miRNA:   3'- gCAGCGGCGCG-------------U--UGUUuGCGCgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 128455 0.71 0.872952
Target:  5'- cCGUCaaGCgGCGCGACGGcGCGCGC-ACg -3'
miRNA:   3'- -GCAG--CGgCGCGUUGUU-UGCGCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 40505 0.71 0.872952
Target:  5'- uGUCGgcaCCGgGCuuCGggacgguguuucGGCGCGCUGCCg -3'
miRNA:   3'- gCAGC---GGCgCGuuGU------------UUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 112293 0.71 0.879973
Target:  5'- --cUGCCGCGCAGCAAAcagauCGCGUUucaGCUc -3'
miRNA:   3'- gcaGCGGCGCGUUGUUU-----GCGCGA---UGG- -5'
1704 3' -54.1 NC_001347.2 + 80906 0.71 0.879973
Target:  5'- ---aGcCCGCGCAACAAGCGC-C-ACCg -3'
miRNA:   3'- gcagC-GGCGCGUUGUUUGCGcGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 163303 0.7 0.886784
Target:  5'- aCGUCgGUCGCgGCGACucguCGCGC-GCCa -3'
miRNA:   3'- -GCAG-CGGCG-CGUUGuuu-GCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 770 0.7 0.886784
Target:  5'- uGUCGCC-CGCGGCAcACGgGCgACg -3'
miRNA:   3'- gCAGCGGcGCGUUGUuUGCgCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 140035 0.7 0.886784
Target:  5'- aGUCGUCgGCGCGGCAucccAGCGCcgGCgguacgGCCa -3'
miRNA:   3'- gCAGCGG-CGCGUUGU----UUGCG--CGa-----UGG- -5'
1704 3' -54.1 NC_001347.2 + 38468 0.7 0.893381
Target:  5'- --cCGCCGCGCAGCccagccacCGCGCgggcagcACCg -3'
miRNA:   3'- gcaGCGGCGCGUUGuuu-----GCGCGa------UGG- -5'
1704 3' -54.1 NC_001347.2 + 4870 0.7 0.899759
Target:  5'- -aUCGCCGuCGCAuCGccccGAgGCGCUGCUc -3'
miRNA:   3'- gcAGCGGC-GCGUuGU----UUgCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 189950 0.7 0.904092
Target:  5'- cCGUCGUCuacggccaaaagcaGCGUAuCGAAUGCGCcGCCu -3'
miRNA:   3'- -GCAGCGG--------------CGCGUuGUUUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 191975 0.7 0.90531
Target:  5'- uGUCGCCGCcaccgcagcggcgGCGACGGACG-GCgGCg -3'
miRNA:   3'- gCAGCGGCG-------------CGUUGUUUGCgCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 210521 0.7 0.905916
Target:  5'- -uUCGCCGCGUcAUGAcCGaCGCUGCUc -3'
miRNA:   3'- gcAGCGGCGCGuUGUUuGC-GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 53645 0.7 0.905916
Target:  5'- cCGUCGCgCGCGCAGgGAAuuuugaaaacCGCGCg--- -3'
miRNA:   3'- -GCAGCG-GCGCGUUgUUU----------GCGCGaugg -5'
1704 3' -54.1 NC_001347.2 + 106005 0.7 0.905916
Target:  5'- uGUCGCC-CGaCGACGAGauCGCGCgGCUg -3'
miRNA:   3'- gCAGCGGcGC-GUUGUUU--GCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 78568 0.7 0.911848
Target:  5'- gCGUgCGCgaacUGCGCGACcugcucACGCGCUACg -3'
miRNA:   3'- -GCA-GCG----GCGCGUUGuu----UGCGCGAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.