miRNA display CGI


Results 81 - 100 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 169077 0.7 0.911848
Target:  5'- aCGUCuCgGC-CAGC--ACGCGCUGCCu -3'
miRNA:   3'- -GCAGcGgCGcGUUGuuUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 201496 0.7 0.913584
Target:  5'- gCGUCGCUggcgcuugguGCGCGACGAaggacgggaugcacaGCGUcuggccaGCUACCu -3'
miRNA:   3'- -GCAGCGG----------CGCGUUGUU---------------UGCG-------CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 164693 0.7 0.917555
Target:  5'- cCGUUGCCGCGUu---AGCGcCGCUuucgguacccGCCg -3'
miRNA:   3'- -GCAGCGGCGCGuuguUUGC-GCGA----------UGG- -5'
1704 3' -54.1 NC_001347.2 + 222423 0.7 0.917555
Target:  5'- gCGUCGCCGCGUcuCGuuCGuCGagGCCg -3'
miRNA:   3'- -GCAGCGGCGCGuuGUuuGC-GCgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 144739 0.7 0.917555
Target:  5'- -cUCGCgaggugaaCGUGC-GCAAACGCGcCUACCu -3'
miRNA:   3'- gcAGCG--------GCGCGuUGUUUGCGC-GAUGG- -5'
1704 3' -54.1 NC_001347.2 + 181105 0.7 0.917555
Target:  5'- cCGU-GCCGCGCAucaccuguuaccACcaguuguuGGGCGCGCUggGCCa -3'
miRNA:   3'- -GCAgCGGCGCGU------------UG--------UUUGCGCGA--UGG- -5'
1704 3' -54.1 NC_001347.2 + 194418 0.69 0.921414
Target:  5'- cCGaaGCCGCGCGagcguGCGAGCgggguucaccugcaGCGCUACg -3'
miRNA:   3'- -GCagCGGCGCGU-----UGUUUG--------------CGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 65151 0.69 0.923034
Target:  5'- aG-CGCCGCGCuggauGACGguGAUGCGCgGCUa -3'
miRNA:   3'- gCaGCGGCGCG-----UUGU--UUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 67635 0.69 0.923034
Target:  5'- uGUCcaGCgGCaGCGACAuGCGgcCGCUGCCg -3'
miRNA:   3'- gCAG--CGgCG-CGUUGUuUGC--GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 14290 0.69 0.923034
Target:  5'- aGUuaUGCCGcCGgAGCucccCGCGCUGCCu -3'
miRNA:   3'- gCA--GCGGC-GCgUUGuuu-GCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 197687 0.69 0.923034
Target:  5'- gCG-CGCUGCGCAggGCAGACuGCGUcACg -3'
miRNA:   3'- -GCaGCGGCGCGU--UGUUUG-CGCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 178738 0.69 0.927771
Target:  5'- --aCGCCccgGCGCAACGGGugcugucCGCGCcGCCg -3'
miRNA:   3'- gcaGCGG---CGCGUUGUUU-------GCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 113625 0.69 0.927771
Target:  5'- aCGUCGUCGCaGCGccggcuggagaGCGAgaggccgGCGUaGCUGCCg -3'
miRNA:   3'- -GCAGCGGCG-CGU-----------UGUU-------UGCG-CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 113411 0.69 0.928285
Target:  5'- -aUCGCCcgacGCGuCGACAGcagugcugccGCaGCGCUGCCa -3'
miRNA:   3'- gcAGCGG----CGC-GUUGUU----------UG-CGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 166138 0.69 0.928285
Target:  5'- gGcCGCCGcCGCAACGccCGUGCccgcggGCCa -3'
miRNA:   3'- gCaGCGGC-GCGUUGUuuGCGCGa-----UGG- -5'
1704 3' -54.1 NC_001347.2 + 15628 0.69 0.928285
Target:  5'- uCGUCGaCGCGCGA-GGGCGCGgaGCg -3'
miRNA:   3'- -GCAGCgGCGCGUUgUUUGCGCgaUGg -5'
1704 3' -54.1 NC_001347.2 + 150410 0.69 0.928285
Target:  5'- gCGUUGCUGUGUcACcuAACGCuGCUAUCa -3'
miRNA:   3'- -GCAGCGGCGCGuUGu-UUGCG-CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 131734 0.69 0.928285
Target:  5'- cCGUCGCCGcCGCcGCGGu--UGCUACUa -3'
miRNA:   3'- -GCAGCGGC-GCGuUGUUugcGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 78605 0.69 0.931825
Target:  5'- -cUCGCgGCGCGAgGAcuccaugagccuggGCGCGCgcgacGCCg -3'
miRNA:   3'- gcAGCGgCGCGUUgUU--------------UGCGCGa----UGG- -5'
1704 3' -54.1 NC_001347.2 + 2337 0.69 0.933308
Target:  5'- uGUCGCacuuucugCGCGCGGgcgugcUggGCGCGCUGgCg -3'
miRNA:   3'- gCAGCG--------GCGCGUU------GuuUGCGCGAUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.