miRNA display CGI


Results 101 - 120 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 107770 0.69 0.933308
Target:  5'- -uUCGCCGuCGCAACAcAGCucucggugcuggGCGCUuCCa -3'
miRNA:   3'- gcAGCGGC-GCGUUGU-UUG------------CGCGAuGG- -5'
1704 3' -54.1 NC_001347.2 + 154626 0.69 0.933308
Target:  5'- uCGUCGauGCGCAGauCGGAaaaGUGCUGCUg -3'
miRNA:   3'- -GCAGCggCGCGUU--GUUUg--CGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 182117 0.69 0.933308
Target:  5'- uCGUC-CCGCGgGuCuucGACGuCGCUGCCg -3'
miRNA:   3'- -GCAGcGGCGCgUuGu--UUGC-GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 66923 0.69 0.933308
Target:  5'- uCGaUUGCgGCgGCAACGGGCGCGacACCg -3'
miRNA:   3'- -GC-AGCGgCG-CGUUGUUUGCGCgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 142882 0.69 0.938103
Target:  5'- cCGcCGCCGCGCuggcaaacuccGACAuuCGCGUcggcGCCc -3'
miRNA:   3'- -GCaGCGGCGCG-----------UUGUuuGCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 125297 0.69 0.938103
Target:  5'- gCGUCaGUgGCGCAaccgucGCAGcCGCGCcgGCCu -3'
miRNA:   3'- -GCAG-CGgCGCGU------UGUUuGCGCGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 75857 0.69 0.938103
Target:  5'- aCGUCgGCCGCGgGGCGcAGCGC-CU-CCu -3'
miRNA:   3'- -GCAG-CGGCGCgUUGU-UUGCGcGAuGG- -5'
1704 3' -54.1 NC_001347.2 + 731 0.69 0.942672
Target:  5'- aCG-CGCCGUGC-----ACGuCGCUGCCu -3'
miRNA:   3'- -GCaGCGGCGCGuuguuUGC-GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 87586 0.69 0.942672
Target:  5'- cCGUgGCCGUG-AGCAGAcCGCGgUGCa -3'
miRNA:   3'- -GCAgCGGCGCgUUGUUU-GCGCgAUGg -5'
1704 3' -54.1 NC_001347.2 + 174726 0.69 0.942672
Target:  5'- ---gGCCuGCGCAACu-ACGCGCcGCUg -3'
miRNA:   3'- gcagCGG-CGCGUUGuuUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 94970 0.69 0.942672
Target:  5'- -cUCGa-GCGUggaGACGAGCGCGCaGCCg -3'
miRNA:   3'- gcAGCggCGCG---UUGUUUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 1686 0.68 0.945736
Target:  5'- aCGUUGCUGCGCGccgaggagGCGAcgGCGCUcggacgggagcugcGCCg -3'
miRNA:   3'- -GCAGCGGCGCGU--------UGUUugCGCGA--------------UGG- -5'
1704 3' -54.1 NC_001347.2 + 189878 0.68 0.947015
Target:  5'- gGUCGCCuGUccgGCAGCAGcCGgGCcGCCu -3'
miRNA:   3'- gCAGCGG-CG---CGUUGUUuGCgCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 81197 0.68 0.947015
Target:  5'- gGUgGCCGCGCGACAGAacccacaaaaG-GCcgGCCg -3'
miRNA:   3'- gCAgCGGCGCGUUGUUUg---------CgCGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 174428 0.68 0.947015
Target:  5'- -uUCGUCGCGuCAGCGGcACGgUGCUGCg -3'
miRNA:   3'- gcAGCGGCGC-GUUGUU-UGC-GCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 172030 0.68 0.949922
Target:  5'- gGUUGCCGCGgcucuccaucgcCAGC--GCGCGCUgggaagcgcugcgcGCCg -3'
miRNA:   3'- gCAGCGGCGC------------GUUGuuUGCGCGA--------------UGG- -5'
1704 3' -54.1 NC_001347.2 + 96926 0.68 0.951135
Target:  5'- gGcCGCCGC-CAGCGucCGCGcCUGCa -3'
miRNA:   3'- gCaGCGGCGcGUUGUuuGCGC-GAUGg -5'
1704 3' -54.1 NC_001347.2 + 105161 0.68 0.951135
Target:  5'- --aCGCCGCGCccgguGCAGACGUuguucgucuCUGCCu -3'
miRNA:   3'- gcaGCGGCGCGu----UGUUUGCGc--------GAUGG- -5'
1704 3' -54.1 NC_001347.2 + 24587 0.68 0.951135
Target:  5'- -cUCGCUcaGCGaaacCGGCAccCGCGCUGCCg -3'
miRNA:   3'- gcAGCGG--CGC----GUUGUuuGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 39211 0.68 0.951135
Target:  5'- --aCGCCGCGCGcCAcACGgCGCccaugGCCu -3'
miRNA:   3'- gcaGCGGCGCGUuGUuUGC-GCGa----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.