miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 81791 0.66 0.986408
Target:  5'- cCGUC-UCGCGCAuu-AACGUGUgcagACCg -3'
miRNA:   3'- -GCAGcGGCGCGUuguUUGCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 156534 0.66 0.984748
Target:  5'- uGUCgGCCGCGCuuacGCGAACG-GCg--- -3'
miRNA:   3'- gCAG-CGGCGCGu---UGUUUGCgCGaugg -5'
1704 3' -54.1 NC_001347.2 + 149425 0.66 0.984748
Target:  5'- gGUgGCUGUGCccGACGAcagcucgugGcCGCGCUAUCg -3'
miRNA:   3'- gCAgCGGCGCG--UUGUU---------U-GCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 68497 0.66 0.984748
Target:  5'- -cUCGCCGUGCuGCAuaaugguaGCGCagaGCCa -3'
miRNA:   3'- gcAGCGGCGCGuUGUuug-----CGCGa--UGG- -5'
1704 3' -54.1 NC_001347.2 + 94289 0.66 0.984748
Target:  5'- aGUcCGCCGCucGCGGuCAAAaGCGCgaucGCCg -3'
miRNA:   3'- gCA-GCGGCG--CGUU-GUUUgCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 145362 0.66 0.984748
Target:  5'- gCGU-GCCuGCGCGACGAAC-UGC-ACCc -3'
miRNA:   3'- -GCAgCGG-CGCGUUGUUUGcGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 228720 0.66 0.984748
Target:  5'- aGUCGCCaccgcCGCGGCGGAuuucCGCGCgggggACg -3'
miRNA:   3'- gCAGCGGc----GCGUUGUUU----GCGCGa----UGg -5'
1704 3' -54.1 NC_001347.2 + 89417 0.66 0.984748
Target:  5'- aGcCGCgGCGCAgucuuggauaACGAugGgGCUAUa -3'
miRNA:   3'- gCaGCGgCGCGU----------UGUUugCgCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 88283 0.66 0.984748
Target:  5'- aCGUCGCCGuCGCGAUcguACuCGaacgACCa -3'
miRNA:   3'- -GCAGCGGC-GCGUUGuu-UGcGCga--UGG- -5'
1704 3' -54.1 NC_001347.2 + 118470 0.66 0.984748
Target:  5'- cCGcCaCCGCGCGGCAGACGCa----- -3'
miRNA:   3'- -GCaGcGGCGCGUUGUUUGCGcgaugg -5'
1704 3' -54.1 NC_001347.2 + 157725 0.66 0.984748
Target:  5'- -cUCGCCGUGCcuAGCAuuacuACGCGCcaaGCg -3'
miRNA:   3'- gcAGCGGCGCG--UUGUu----UGCGCGa--UGg -5'
1704 3' -54.1 NC_001347.2 + 201833 0.66 0.984748
Target:  5'- aCG-CGuUCGCGCAgu-GGCGUGCUACg -3'
miRNA:   3'- -GCaGC-GGCGCGUuguUUGCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 92261 0.66 0.984748
Target:  5'- cCGUgGCCGcCGcCAugAGGCGCGUcauggaagggaUAUCg -3'
miRNA:   3'- -GCAgCGGC-GC-GUugUUUGCGCG-----------AUGG- -5'
1704 3' -54.1 NC_001347.2 + 194044 0.66 0.984748
Target:  5'- -uUCG-UGCGCGugGGGCugGCGCUGCUc -3'
miRNA:   3'- gcAGCgGCGCGUugUUUG--CGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 63108 0.66 0.984748
Target:  5'- cCGUgGCCGcCGCGGCc-GC-CGCUgugGCCg -3'
miRNA:   3'- -GCAgCGGC-GCGUUGuuUGcGCGA---UGG- -5'
1704 3' -54.1 NC_001347.2 + 41150 0.66 0.984573
Target:  5'- cCGUCccCCGCGCGgaaauccgccgcgGCGGugGCGaCUggGCCg -3'
miRNA:   3'- -GCAGc-GGCGCGU-------------UGUUugCGC-GA--UGG- -5'
1704 3' -54.1 NC_001347.2 + 82098 0.66 0.98422
Target:  5'- uCGUCGUCGCGCuccagcACAuacuugugagugccGACGCGaaacgacaugGCCa -3'
miRNA:   3'- -GCAGCGGCGCGu-----UGU--------------UUGCGCga--------UGG- -5'
1704 3' -54.1 NC_001347.2 + 66597 0.66 0.982937
Target:  5'- cCGUUGCCG-GCAACu--UGCGaCaACCg -3'
miRNA:   3'- -GCAGCGGCgCGUUGuuuGCGC-GaUGG- -5'
1704 3' -54.1 NC_001347.2 + 98049 0.66 0.982937
Target:  5'- --aCGCCGCggcgGCAGCGGcCGCgGCUuCCa -3'
miRNA:   3'- gcaGCGGCG----CGUUGUUuGCG-CGAuGG- -5'
1704 3' -54.1 NC_001347.2 + 192121 0.66 0.982937
Target:  5'- gGUCGCCGC-CAcCGc-CGuCGUUGCCg -3'
miRNA:   3'- gCAGCGGCGcGUuGUuuGC-GCGAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.