miRNA display CGI


Results 41 - 60 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 98049 0.66 0.982937
Target:  5'- --aCGCCGCggcgGCAGCGGcCGCgGCUuCCa -3'
miRNA:   3'- gcaGCGGCG----CGUUGUUuGCG-CGAuGG- -5'
1704 3' -54.1 NC_001347.2 + 66597 0.66 0.982937
Target:  5'- cCGUUGCCG-GCAACu--UGCGaCaACCg -3'
miRNA:   3'- -GCAGCGGCgCGUUGuuuGCGC-GaUGG- -5'
1704 3' -54.1 NC_001347.2 + 197552 0.66 0.982937
Target:  5'- gCGUgGCCgGCGUGGCGgccgacggcAGCGUGCUguGCUa -3'
miRNA:   3'- -GCAgCGG-CGCGUUGU---------UUGCGCGA--UGG- -5'
1704 3' -54.1 NC_001347.2 + 191147 0.66 0.982556
Target:  5'- gCGUCgcgccauGCCGCGUGACGcugacccguccaaAGgGCGCcGCCu -3'
miRNA:   3'- -GCAG-------CGGCGCGUUGU-------------UUgCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 77884 0.66 0.980969
Target:  5'- uGggCGCCGUGCGcguaGCcAACGCGC--CCg -3'
miRNA:   3'- gCa-GCGGCGCGU----UGuUUGCGCGauGG- -5'
1704 3' -54.1 NC_001347.2 + 22602 0.66 0.980969
Target:  5'- ---gGCCG-GCAACAAucccACGCGCUGg- -3'
miRNA:   3'- gcagCGGCgCGUUGUU----UGCGCGAUgg -5'
1704 3' -54.1 NC_001347.2 + 87642 0.66 0.980969
Target:  5'- uGUUGCuCGCcaGCGGCGcGCGUGCggaucagGCCc -3'
miRNA:   3'- gCAGCG-GCG--CGUUGUuUGCGCGa------UGG- -5'
1704 3' -54.1 NC_001347.2 + 5881 0.66 0.980969
Target:  5'- aGUCGCCGCagucGCAccACAGGcCGUGCg--- -3'
miRNA:   3'- gCAGCGGCG----CGU--UGUUU-GCGCGaugg -5'
1704 3' -54.1 NC_001347.2 + 74117 0.66 0.980969
Target:  5'- gGUCaGCCGCGggguugauaccCAGCGAcgGCGuCGCUcCCa -3'
miRNA:   3'- gCAG-CGGCGC-----------GUUGUU--UGC-GCGAuGG- -5'
1704 3' -54.1 NC_001347.2 + 174834 0.66 0.980969
Target:  5'- uGgCGCCuGUGCAugAAGCGCGaggguuCCa -3'
miRNA:   3'- gCaGCGG-CGCGUugUUUGCGCgau---GG- -5'
1704 3' -54.1 NC_001347.2 + 105541 0.66 0.980969
Target:  5'- aGggCGaCGCGCuau--GCGUGCUGCCg -3'
miRNA:   3'- gCa-GCgGCGCGuuguuUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 197032 0.66 0.980969
Target:  5'- aCG-CGCCGCaGgAuCGcACGCGgCUGCCg -3'
miRNA:   3'- -GCaGCGGCG-CgUuGUuUGCGC-GAUGG- -5'
1704 3' -54.1 NC_001347.2 + 196939 0.66 0.980969
Target:  5'- aCGUUuucaaGCUGCGCcggGGCugucGCGCGCcGCCg -3'
miRNA:   3'- -GCAG-----CGGCGCG---UUGuu--UGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 155137 0.66 0.980969
Target:  5'- gGcCGCCGCgGCGGCca--GCGCUucguCCa -3'
miRNA:   3'- gCaGCGGCG-CGUUGuuugCGCGAu---GG- -5'
1704 3' -54.1 NC_001347.2 + 167881 0.66 0.980969
Target:  5'- uGagGCCGC-UGGCGucACGCGCUugCa -3'
miRNA:   3'- gCagCGGCGcGUUGUu-UGCGCGAugG- -5'
1704 3' -54.1 NC_001347.2 + 162100 0.66 0.980969
Target:  5'- uCGUCGCUgaGCGCuuucCGGGcCGCGUcgGCCu -3'
miRNA:   3'- -GCAGCGG--CGCGuu--GUUU-GCGCGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 30589 0.66 0.980346
Target:  5'- aCG-CGCCGgGCGGCuuccugcggccggcCGCGgUGCCg -3'
miRNA:   3'- -GCaGCGGCgCGUUGuuu-----------GCGCgAUGG- -5'
1704 3' -54.1 NC_001347.2 + 128134 0.66 0.980136
Target:  5'- uGUCGCCGcCGCcacgcgucauucucAGCGuACGCGacaaaauCUGCCc -3'
miRNA:   3'- gCAGCGGC-GCG--------------UUGUuUGCGC-------GAUGG- -5'
1704 3' -54.1 NC_001347.2 + 6886 0.67 0.978835
Target:  5'- aCGUUGCCGaaGUAACAuguCGCGUUgacacuggagcGCCg -3'
miRNA:   3'- -GCAGCGGCg-CGUUGUuu-GCGCGA-----------UGG- -5'
1704 3' -54.1 NC_001347.2 + 48843 0.67 0.978835
Target:  5'- gCGUCaggGCgGUGCGGCGuuCGCGUgcacgcGCCa -3'
miRNA:   3'- -GCAG---CGgCGCGUUGUuuGCGCGa-----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.