miRNA display CGI


Results 81 - 100 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 86317 0.67 0.971375
Target:  5'- uCGUCGCgagccaGCGCGGCc-ACGCGCg--- -3'
miRNA:   3'- -GCAGCGg-----CGCGUUGuuUGCGCGaugg -5'
1704 3' -54.1 NC_001347.2 + 87701 0.67 0.971375
Target:  5'- -cUCGCUGUGCuu---ACGCGCcACCu -3'
miRNA:   3'- gcAGCGGCGCGuuguuUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 196734 0.67 0.971375
Target:  5'- gCGcUGCUGCGCAAgGGACuCGCUcagaACCc -3'
miRNA:   3'- -GCaGCGGCGCGUUgUUUGcGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 166620 0.67 0.971375
Target:  5'- cCGUcaCGCCGUccucCGAgAGGCGCGCccgGCCa -3'
miRNA:   3'- -GCA--GCGGCGc---GUUgUUUGCGCGa--UGG- -5'
1704 3' -54.1 NC_001347.2 + 150327 0.67 0.971375
Target:  5'- -cUCGCUGCugGACGAGUGCGcCUGCCg -3'
miRNA:   3'- gcAGCGGCGcgUUGUUUGCGC-GAUGG- -5'
1704 3' -54.1 NC_001347.2 + 76988 0.67 0.968808
Target:  5'- --cCGCCGUGCcgguGACGAgcaGCGCGCggaagggaaagaaggGCCa -3'
miRNA:   3'- gcaGCGGCGCG----UUGUU---UGCGCGa--------------UGG- -5'
1704 3' -54.1 NC_001347.2 + 65337 0.67 0.968513
Target:  5'- gGUgGCCauaCGCAACGAagccACGCG-UACCa -3'
miRNA:   3'- gCAgCGGc--GCGUUGUU----UGCGCgAUGG- -5'
1704 3' -54.1 NC_001347.2 + 8049 0.67 0.968513
Target:  5'- gCGUCGCCaGaaaaGCAGCGgguGACGCacgGCUuCCa -3'
miRNA:   3'- -GCAGCGG-Cg---CGUUGU---UUGCG---CGAuGG- -5'
1704 3' -54.1 NC_001347.2 + 191782 0.67 0.968513
Target:  5'- uGUgGCgGCacaGCcGCAGGCGCuCUGCCa -3'
miRNA:   3'- gCAgCGgCG---CGuUGUUUGCGcGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 126578 0.67 0.968513
Target:  5'- gCGUU-CCGCG-AACGuGCGCGuCUGCCc -3'
miRNA:   3'- -GCAGcGGCGCgUUGUuUGCGC-GAUGG- -5'
1704 3' -54.1 NC_001347.2 + 65518 0.67 0.968513
Target:  5'- --cUGCCGCccgaGCugaAGCAGACGCGCgucaACCu -3'
miRNA:   3'- gcaGCGGCG----CG---UUGUUUGCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 190753 0.67 0.968513
Target:  5'- gCGUCGCCGCuaAAaaagaguGACGgGUUGCg -3'
miRNA:   3'- -GCAGCGGCGcgUUgu-----UUGCgCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 82881 0.68 0.966702
Target:  5'- -aUCGgCGCGCccccaucgccucccgAGCGAGCGgGCcGCCg -3'
miRNA:   3'- gcAGCgGCGCG---------------UUGUUUGCgCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 114414 0.68 0.965454
Target:  5'- ---gGCCGUGUucgAugAAACGCGC-GCCg -3'
miRNA:   3'- gcagCGGCGCG---UugUUUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 128106 0.68 0.965454
Target:  5'- --cCGCCGCaCGACcugccCGCGUUGCCc -3'
miRNA:   3'- gcaGCGGCGcGUUGuuu--GCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 78671 0.68 0.965454
Target:  5'- gGagGCCGUGCGcaAGGCGCGCgACg -3'
miRNA:   3'- gCagCGGCGCGUugUUUGCGCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 153677 0.68 0.965454
Target:  5'- uGUUGCCgGCGCAcuggggucGCAGAaaaaGUGCUugUa -3'
miRNA:   3'- gCAGCGG-CGCGU--------UGUUUg---CGCGAugG- -5'
1704 3' -54.1 NC_001347.2 + 26598 0.68 0.965454
Target:  5'- cCGUCucagcuCCGUGUGGCGuGACGCGCUuuuuACCu -3'
miRNA:   3'- -GCAGc-----GGCGCGUUGU-UUGCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 188627 0.68 0.965454
Target:  5'- cCGUCGggacaGCGCGugGGACGUGagGCCg -3'
miRNA:   3'- -GCAGCgg---CGCGUugUUUGCGCgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 77959 0.68 0.965454
Target:  5'- ---aGCUGCGCGGCAAGCacaucCGCUugUa -3'
miRNA:   3'- gcagCGGCGCGUUGUUUGc----GCGAugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.