miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 731 0.69 0.942672
Target:  5'- aCG-CGCCGUGC-----ACGuCGCUGCCu -3'
miRNA:   3'- -GCaGCGGCGCGuuguuUGC-GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 770 0.7 0.886784
Target:  5'- uGUCGCC-CGCGGCAcACGgGCgACg -3'
miRNA:   3'- gCAGCGGcGCGUUGUuUGCgCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 896 0.71 0.872238
Target:  5'- uGUCGCCGCGCcccccgccccuugGucGCGGcCGCGggGCCg -3'
miRNA:   3'- gCAGCGGCGCG-------------U--UGUUuGCGCgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 1255 0.79 0.446139
Target:  5'- gGUCGCaGCGCGACGcgggcACGCuGCUGCCg -3'
miRNA:   3'- gCAGCGgCGCGUUGUu----UGCG-CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 1320 0.73 0.798568
Target:  5'- --aCGCCGCGCAGCcagaugaacggcguGGGCGCGacggACCu -3'
miRNA:   3'- gcaGCGGCGCGUUG--------------UUUGCGCga--UGG- -5'
1704 3' -54.1 NC_001347.2 + 1369 0.76 0.615553
Target:  5'- uGUCGCCGCGgGAC--GCGUggaucguacuggugGCUACCg -3'
miRNA:   3'- gCAGCGGCGCgUUGuuUGCG--------------CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 1636 0.66 0.987926
Target:  5'- gCGUgGgcaccCCGCGCGc--GACGCuGCUGCCu -3'
miRNA:   3'- -GCAgC-----GGCGCGUuguUUGCG-CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 1686 0.68 0.945736
Target:  5'- aCGUUGCUGCGCGccgaggagGCGAcgGCGCUcggacgggagcugcGCCg -3'
miRNA:   3'- -GCAGCGGCGCGU--------UGUUugCGCGA--------------UGG- -5'
1704 3' -54.1 NC_001347.2 + 1742 0.68 0.955036
Target:  5'- ---gGCCG-GCAcgACGGugGCGCUGCa -3'
miRNA:   3'- gcagCGGCgCGU--UGUUugCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 1839 0.68 0.958719
Target:  5'- gCGUCGgCGcCGCAcCccGCGuCGCUGCUg -3'
miRNA:   3'- -GCAGCgGC-GCGUuGuuUGC-GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 2100 0.68 0.951135
Target:  5'- aCGgCGCCGC-CGGCGGGgGCGCgauuugcgUGCCu -3'
miRNA:   3'- -GCaGCGGCGcGUUGUUUgCGCG--------AUGG- -5'
1704 3' -54.1 NC_001347.2 + 2238 0.72 0.834863
Target:  5'- cCGU-GCCGCGCGcCAugcugGugGUGCUGCUg -3'
miRNA:   3'- -GCAgCGGCGCGUuGU-----UugCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 2337 0.69 0.933308
Target:  5'- uGUCGCacuuucugCGCGCGGgcgugcUggGCGCGCUGgCg -3'
miRNA:   3'- gCAGCG--------GCGCGUU------GuuUGCGCGAUgG- -5'
1704 3' -54.1 NC_001347.2 + 2403 0.74 0.746479
Target:  5'- cCGagGCCGCGCGGCG-GC-UGCUGCCc -3'
miRNA:   3'- -GCagCGGCGCGUUGUuUGcGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 2454 0.75 0.678423
Target:  5'- ---gGCCGCGCug-GGACGCGCUGCa -3'
miRNA:   3'- gcagCGGCGCGuugUUUGCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 2485 0.79 0.455084
Target:  5'- gCG-CGCCGCGCugUggGCGCGCgaGCCg -3'
miRNA:   3'- -GCaGCGGCGCGuuGuuUGCGCGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 4870 0.7 0.899759
Target:  5'- -aUCGCCGuCGCAuCGccccGAgGCGCUGCUc -3'
miRNA:   3'- gcAGCGGC-GCGUuGU----UUgCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 5881 0.66 0.980969
Target:  5'- aGUCGCCGCagucGCAccACAGGcCGUGCg--- -3'
miRNA:   3'- gCAGCGGCG----CGU--UGUUU-GCGCGaugg -5'
1704 3' -54.1 NC_001347.2 + 6886 0.67 0.978835
Target:  5'- aCGUUGCCGaaGUAACAuguCGCGUUgacacuggagcGCCg -3'
miRNA:   3'- -GCAGCGGCg-CGUUGUuu-GCGCGA-----------UGG- -5'
1704 3' -54.1 NC_001347.2 + 8049 0.67 0.968513
Target:  5'- gCGUCGCCaGaaaaGCAGCGgguGACGCacgGCUuCCa -3'
miRNA:   3'- -GCAGCGG-Cg---CGUUGU---UUGCG---CGAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.