miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 8375 0.73 0.77072
Target:  5'- aGUUGCCGCGCc-CAAAauucacgcguaaaGCGUUGCCg -3'
miRNA:   3'- gCAGCGGCGCGuuGUUUg------------CGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 10812 0.66 0.986408
Target:  5'- uGUaCGCCaucaGCGCGAUggGCGCcagGUaGCCg -3'
miRNA:   3'- gCA-GCGG----CGCGUUGuuUGCG---CGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 12445 0.68 0.951135
Target:  5'- uGUCGUuauCGCGGCGAAUGCG-UGCCu -3'
miRNA:   3'- gCAGCGgc-GCGUUGUUUGCGCgAUGG- -5'
1704 3' -54.1 NC_001347.2 + 14290 0.69 0.923034
Target:  5'- aGUuaUGCCGcCGgAGCucccCGCGCUGCCu -3'
miRNA:   3'- gCA--GCGGC-GCgUUGuuu-GCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 14796 0.68 0.961853
Target:  5'- cCGUU-CCGCGaCGAUAuccuaagGGCGCGCgUACCa -3'
miRNA:   3'- -GCAGcGGCGC-GUUGU-------UUGCGCG-AUGG- -5'
1704 3' -54.1 NC_001347.2 + 15628 0.69 0.928285
Target:  5'- uCGUCGaCGCGCGA-GGGCGCGgaGCg -3'
miRNA:   3'- -GCAGCgGCGCGUUgUUUGCGCgaUGg -5'
1704 3' -54.1 NC_001347.2 + 16563 0.66 0.987926
Target:  5'- uGUaCGUCaCGCuGCAAcUGCGUUGCCg -3'
miRNA:   3'- gCA-GCGGcGCGuUGUUuGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 16807 0.74 0.727384
Target:  5'- gCGUCGCCGCuacgAACAcggucuacGGCGCGCgGCCa -3'
miRNA:   3'- -GCAGCGGCGcg--UUGU--------UUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 17334 0.72 0.842859
Target:  5'- gGUUGCCGCGCGu--AugGCcGCcgGCCa -3'
miRNA:   3'- gCAGCGGCGCGUuguUugCG-CGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 20320 0.66 0.986408
Target:  5'- gGUCGCUGCcaCAGCAGcgGCGUcGCCc -3'
miRNA:   3'- gCAGCGGCGc-GUUGUUugCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 20458 0.8 0.394634
Target:  5'- cCGUCGCCaccaugcagGCGCAggagGCuAACGCGCUGCUg -3'
miRNA:   3'- -GCAGCGG---------CGCGU----UGuUUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 22190 0.67 0.974045
Target:  5'- uCGU-GCCGCuccaucGCAGCc-ACGCGCUggugGCCg -3'
miRNA:   3'- -GCAgCGGCG------CGUUGuuUGCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 22602 0.66 0.980969
Target:  5'- ---gGCCG-GCAACAAucccACGCGCUGg- -3'
miRNA:   3'- gcagCGGCgCGUUGUU----UGCGCGAUgg -5'
1704 3' -54.1 NC_001347.2 + 24587 0.68 0.951135
Target:  5'- -cUCGCUcaGCGaaacCGGCAccCGCGCUGCCg -3'
miRNA:   3'- gcAGCGG--CGC----GUUGUuuGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 25350 0.68 0.962191
Target:  5'- uGUUGCCGCGUGGCGcugcacaccuauGGCGCcguggguuggcaGCUgGCCg -3'
miRNA:   3'- gCAGCGGCGCGUUGU------------UUGCG------------CGA-UGG- -5'
1704 3' -54.1 NC_001347.2 + 26598 0.68 0.965454
Target:  5'- cCGUCucagcuCCGUGUGGCGuGACGCGCUuuuuACCu -3'
miRNA:   3'- -GCAGc-----GGCGCGUUGU-UUGCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 30589 0.66 0.980346
Target:  5'- aCG-CGCCGgGCGGCuuccugcggccggcCGCGgUGCCg -3'
miRNA:   3'- -GCaGCGGCgCGUUGuuu-----------GCGCgAUGG- -5'
1704 3' -54.1 NC_001347.2 + 31941 0.66 0.987926
Target:  5'- -aUCGCCaucUGUAugGCGAugGUGCUGCUg -3'
miRNA:   3'- gcAGCGGc--GCGU--UGUUugCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 33467 0.66 0.982937
Target:  5'- uGUCuCCGCGaCAACAAGCuuGUGUU-CCg -3'
miRNA:   3'- gCAGcGGCGC-GUUGUUUG--CGCGAuGG- -5'
1704 3' -54.1 NC_001347.2 + 38008 0.72 0.842859
Target:  5'- aGcCGCCGCGCGGCcucggcGGCGgGC-GCCg -3'
miRNA:   3'- gCaGCGGCGCGUUGu-----UUGCgCGaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.