miRNA display CGI


Results 41 - 60 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 38468 0.7 0.893381
Target:  5'- --cCGCCGCGCAGCccagccacCGCGCgggcagcACCg -3'
miRNA:   3'- gcaGCGGCGCGUUGuuu-----GCGCGa------UGG- -5'
1704 3' -54.1 NC_001347.2 + 38647 0.68 0.955036
Target:  5'- aGUCGCCuGCcCGGCGucuGCaGCGCcACCg -3'
miRNA:   3'- gCAGCGG-CGcGUUGUu--UG-CGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 38717 0.68 0.954273
Target:  5'- cCGUCGCCuccucggcGCGCAGCAAcgucugucggaGCGCcgGCUg -3'
miRNA:   3'- -GCAGCGG--------CGCGUUGUUug---------CGCGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 39045 0.66 0.988071
Target:  5'- gCGUC-CCGCgGCGACAGuugacgcagguccguCGCGCccacGCCg -3'
miRNA:   3'- -GCAGcGGCG-CGUUGUUu--------------GCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 39157 0.67 0.978835
Target:  5'- cCG-CGUCGCGCuGCGaccacuugcgcAugGCGCgGCCc -3'
miRNA:   3'- -GCaGCGGCGCGuUGU-----------UugCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 39211 0.68 0.951135
Target:  5'- --aCGCCGCGCGcCAcACGgCGCccaugGCCu -3'
miRNA:   3'- gcaGCGGCGCGUuGUuUGC-GCGa----UGG- -5'
1704 3' -54.1 NC_001347.2 + 39635 0.66 0.987926
Target:  5'- uCGUCGCCcguGUGCcGCGGGCGacacgcaGCUGgCu -3'
miRNA:   3'- -GCAGCGG---CGCGuUGUUUGCg------CGAUgG- -5'
1704 3' -54.1 NC_001347.2 + 39763 0.71 0.850672
Target:  5'- aGgaaGaCGCGCGGCAGGCGCG-UACCa -3'
miRNA:   3'- gCag-CgGCGCGUUGUUUGCGCgAUGG- -5'
1704 3' -54.1 NC_001347.2 + 40505 0.71 0.872952
Target:  5'- uGUCGgcaCCGgGCuuCGggacgguguuucGGCGCGCUGCCg -3'
miRNA:   3'- gCAGC---GGCgCGuuGU------------UUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 41150 0.66 0.984573
Target:  5'- cCGUCccCCGCGCGgaaauccgccgcgGCGGugGCGaCUggGCCg -3'
miRNA:   3'- -GCAGc-GGCGCGU-------------UGUUugCGC-GA--UGG- -5'
1704 3' -54.1 NC_001347.2 + 48843 0.67 0.978835
Target:  5'- gCGUCaggGCgGUGCGGCGuuCGCGUgcacgcGCCa -3'
miRNA:   3'- -GCAG---CGgCGCGUUGUuuGCGCGa-----UGG- -5'
1704 3' -54.1 NC_001347.2 + 53478 0.66 0.987926
Target:  5'- -uUCGUCGU-CAACGAuggcACGCGUUAUCa -3'
miRNA:   3'- gcAGCGGCGcGUUGUU----UGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 53645 0.7 0.905916
Target:  5'- cCGUCGCgCGCGCAGgGAAuuuugaaaacCGCGCg--- -3'
miRNA:   3'- -GCAGCG-GCGCGUUgUUU----------GCGCGaugg -5'
1704 3' -54.1 NC_001347.2 + 54402 0.66 0.982937
Target:  5'- uGUgUGCCGCGCua-AAAUGgGCUAUa -3'
miRNA:   3'- gCA-GCGGCGCGuugUUUGCgCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 54483 0.72 0.813269
Target:  5'- uGUCGCCgacuaaauucaugucGCGCGAUAGugGUGUUuaucGCCg -3'
miRNA:   3'- gCAGCGG---------------CGCGUUGUUugCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 56440 0.66 0.986408
Target:  5'- uCGUUGCUGcCGC-----GCGCGCcACCa -3'
miRNA:   3'- -GCAGCGGC-GCGuuguuUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 63108 0.66 0.984748
Target:  5'- cCGUgGCCGcCGCGGCc-GC-CGCUgugGCCg -3'
miRNA:   3'- -GCAgCGGC-GCGUUGuuUGcGCGA---UGG- -5'
1704 3' -54.1 NC_001347.2 + 64852 0.71 0.858295
Target:  5'- aGUCGCCGU-CAGCGu-CGCuCUACCg -3'
miRNA:   3'- gCAGCGGCGcGUUGUuuGCGcGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 65151 0.69 0.923034
Target:  5'- aG-CGCCGCGCuggauGACGguGAUGCGCgGCUa -3'
miRNA:   3'- gCaGCGGCGCG-----UUGU--UUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 65337 0.67 0.968513
Target:  5'- gGUgGCCauaCGCAACGAagccACGCG-UACCa -3'
miRNA:   3'- gCAgCGGc--GCGUUGUU----UGCGCgAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.