miRNA display CGI


Results 61 - 80 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 65370 0.68 0.965454
Target:  5'- cCG-CGCCGUGCGucuGCccguGAGCacCGCUGCCg -3'
miRNA:   3'- -GCaGCGGCGCGU---UG----UUUGc-GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 65518 0.67 0.968513
Target:  5'- --cUGCCGCccgaGCugaAGCAGACGCGCgucaACCu -3'
miRNA:   3'- gcaGCGGCG----CG---UUGUUUGCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 65971 0.76 0.598592
Target:  5'- gGUUGCCuggacgccuggGCGCGACGcGGCGUGCUGCUg -3'
miRNA:   3'- gCAGCGG-----------CGCGUUGU-UUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 66208 0.82 0.320661
Target:  5'- cCGUCGCCGCGCAACAccaccCGCGCcuucgugggcaacgACCa -3'
miRNA:   3'- -GCAGCGGCGCGUUGUuu---GCGCGa-------------UGG- -5'
1704 3' -54.1 NC_001347.2 + 66597 0.66 0.982937
Target:  5'- cCGUUGCCG-GCAACu--UGCGaCaACCg -3'
miRNA:   3'- -GCAGCGGCgCGUUGuuuGCGC-GaUGG- -5'
1704 3' -54.1 NC_001347.2 + 66923 0.69 0.933308
Target:  5'- uCGaUUGCgGCgGCAACGGGCGCGacACCg -3'
miRNA:   3'- -GC-AGCGgCG-CGUUGUUUGCGCgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 67365 0.68 0.960827
Target:  5'- cCGUCGCCGCcgccucggacuccuGCAccgucucgcccgcGCuguGgGCGCUGCUg -3'
miRNA:   3'- -GCAGCGGCG--------------CGU-------------UGuu-UgCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 67635 0.69 0.923034
Target:  5'- uGUCcaGCgGCaGCGACAuGCGgcCGCUGCCg -3'
miRNA:   3'- gCAG--CGgCG-CGUUGUuUGC--GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 68497 0.66 0.984748
Target:  5'- -cUCGCCGUGCuGCAuaaugguaGCGCagaGCCa -3'
miRNA:   3'- gcAGCGGCGCGuUGUuug-----CGCGa--UGG- -5'
1704 3' -54.1 NC_001347.2 + 68557 0.67 0.971375
Target:  5'- -aUCGCCGUccacGCAGuugacCAGACGCGCggUAUCg -3'
miRNA:   3'- gcAGCGGCG----CGUU-----GUUUGCGCG--AUGG- -5'
1704 3' -54.1 NC_001347.2 + 71711 0.67 0.97653
Target:  5'- -aUCGCCGC-CGACccGCGUGUgcccUGCCu -3'
miRNA:   3'- gcAGCGGCGcGUUGuuUGCGCG----AUGG- -5'
1704 3' -54.1 NC_001347.2 + 74117 0.66 0.980969
Target:  5'- gGUCaGCCGCGggguugauaccCAGCGAcgGCGuCGCUcCCa -3'
miRNA:   3'- gCAG-CGGCGC-----------GUUGUU--UGC-GCGAuGG- -5'
1704 3' -54.1 NC_001347.2 + 74849 0.67 0.971375
Target:  5'- --cCGCCGCGaaaGGC---CGCGCUGCa -3'
miRNA:   3'- gcaGCGGCGCg--UUGuuuGCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 75450 0.71 0.858295
Target:  5'- --aCGUCGgGCAGCucAACGCGC-GCCa -3'
miRNA:   3'- gcaGCGGCgCGUUGu-UUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 75857 0.69 0.938103
Target:  5'- aCGUCgGCCGCGgGGCGcAGCGC-CU-CCu -3'
miRNA:   3'- -GCAG-CGGCGCgUUGU-UUGCGcGAuGG- -5'
1704 3' -54.1 NC_001347.2 + 76901 0.66 0.987926
Target:  5'- gGUU-CUGCGCGGCGAucacCGUGgUACCg -3'
miRNA:   3'- gCAGcGGCGCGUUGUUu---GCGCgAUGG- -5'
1704 3' -54.1 NC_001347.2 + 76988 0.67 0.968808
Target:  5'- --cCGCCGUGCcgguGACGAgcaGCGCGCggaagggaaagaaggGCCa -3'
miRNA:   3'- gcaGCGGCGCG----UUGUU---UGCGCGa--------------UGG- -5'
1704 3' -54.1 NC_001347.2 + 77437 0.74 0.727384
Target:  5'- --gUGCUGCGCGACccguGCGUGCUGCg -3'
miRNA:   3'- gcaGCGGCGCGUUGuu--UGCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 77614 0.68 0.958361
Target:  5'- uCGUUGCgccagagCGUGCaAACGGGCGUGCUgggcgGCCu -3'
miRNA:   3'- -GCAGCG-------GCGCG-UUGUUUGCGCGA-----UGG- -5'
1704 3' -54.1 NC_001347.2 + 77884 0.66 0.980969
Target:  5'- uGggCGCCGUGCGcguaGCcAACGCGC--CCg -3'
miRNA:   3'- gCa-GCGGCGCGU----UGuUUGCGCGauGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.