miRNA display CGI


Results 81 - 100 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 77959 0.68 0.965454
Target:  5'- ---aGCUGCGCGGCAAGCacaucCGCUugUa -3'
miRNA:   3'- gcagCGGCGCGUUGUUUGc----GCGAugG- -5'
1704 3' -54.1 NC_001347.2 + 78568 0.7 0.911848
Target:  5'- gCGUgCGCgaacUGCGCGACcugcucACGCGCUACg -3'
miRNA:   3'- -GCA-GCG----GCGCGUUGuu----UGCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 78605 0.69 0.931825
Target:  5'- -cUCGCgGCGCGAgGAcuccaugagccuggGCGCGCgcgacGCCg -3'
miRNA:   3'- gcAGCGgCGCGUUgUU--------------UGCGCGa----UGG- -5'
1704 3' -54.1 NC_001347.2 + 78671 0.68 0.965454
Target:  5'- gGagGCCGUGCGcaAGGCGCGCgACg -3'
miRNA:   3'- gCagCGGCGCGUugUUUGCGCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 79152 0.68 0.951135
Target:  5'- cCG-CGCCGCGCcgcuugaucacGGCAGACgaggagcgGCGCgGCCc -3'
miRNA:   3'- -GCaGCGGCGCG-----------UUGUUUG--------CGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 80724 0.67 0.972196
Target:  5'- aGUCGCCaccggcuGCGCAGCAAcagccaccuaacgccGCGgGCgGCg -3'
miRNA:   3'- gCAGCGG-------CGCGUUGUU---------------UGCgCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 80906 0.71 0.879973
Target:  5'- ---aGcCCGCGCAACAAGCGC-C-ACCg -3'
miRNA:   3'- gcagC-GGCGCGUUGUUUGCGcGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 81197 0.68 0.947015
Target:  5'- gGUgGCCGCGCGACAGAacccacaaaaG-GCcgGCCg -3'
miRNA:   3'- gCAgCGGCGCGUUGUUUg---------CgCGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 81386 0.73 0.781648
Target:  5'- aGUCGCgCGCGCGuACAcacuuggccagcACGCGCUcgACCa -3'
miRNA:   3'- gCAGCG-GCGCGU-UGUu-----------UGCGCGA--UGG- -5'
1704 3' -54.1 NC_001347.2 + 81484 0.78 0.520195
Target:  5'- gCGUCGUCGCuCGGCGggUGCGC-ACCg -3'
miRNA:   3'- -GCAGCGGCGcGUUGUuuGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 81547 0.67 0.975061
Target:  5'- cCGUCGCCGUcgucacgugGCAGCGgcggcaacagccagcGACGauCGCcGCCg -3'
miRNA:   3'- -GCAGCGGCG---------CGUUGU---------------UUGC--GCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 81791 0.66 0.986408
Target:  5'- cCGUC-UCGCGCAuu-AACGUGUgcagACCg -3'
miRNA:   3'- -GCAGcGGCGCGUuguUUGCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 81901 0.68 0.951135
Target:  5'- gGUaGUCGCGUAGCG-GCG-GCUGCCc -3'
miRNA:   3'- gCAgCGGCGCGUUGUuUGCgCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 82098 0.66 0.98422
Target:  5'- uCGUCGUCGCGCuccagcACAuacuugugagugccGACGCGaaacgacaugGCCa -3'
miRNA:   3'- -GCAGCGGCGCGu-----UGU--------------UUGCGCga--------UGG- -5'
1704 3' -54.1 NC_001347.2 + 82406 0.72 0.809849
Target:  5'- gCG-CGCCaacaCGCGGauuAACGCGCUGCCu -3'
miRNA:   3'- -GCaGCGGc---GCGUUgu-UUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 82513 0.67 0.97653
Target:  5'- cCGagGCCaGCGCAGCGuagcuGGCGCGaUGCa -3'
miRNA:   3'- -GCagCGG-CGCGUUGU-----UUGCGCgAUGg -5'
1704 3' -54.1 NC_001347.2 + 82573 0.77 0.578728
Target:  5'- gGUCaCCGCGCAccACGAACGUGUgaaGCCg -3'
miRNA:   3'- gCAGcGGCGCGU--UGUUUGCGCGa--UGG- -5'
1704 3' -54.1 NC_001347.2 + 82881 0.68 0.966702
Target:  5'- -aUCGgCGCGCccccaucgccucccgAGCGAGCGgGCcGCCg -3'
miRNA:   3'- gcAGCgGCGCG---------------UUGUUUGCgCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 85213 0.72 0.818351
Target:  5'- ---aGCCG-GCAGugaaAAGCGCGCUACCu -3'
miRNA:   3'- gcagCGGCgCGUUg---UUUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 86221 0.67 0.97653
Target:  5'- uCGUCGCacCGCuCGGCc-ACGCGCU-CCa -3'
miRNA:   3'- -GCAGCG--GCGcGUUGuuUGCGCGAuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.