miRNA display CGI


Results 21 - 40 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 197552 0.66 0.982937
Target:  5'- gCGUgGCCgGCGUGGCGgccgacggcAGCGUGCUguGCUa -3'
miRNA:   3'- -GCAgCGG-CGCGUUGU---------UUGCGCGA--UGG- -5'
1704 3' -54.1 NC_001347.2 + 197149 0.73 0.755887
Target:  5'- uCGUCGCCGCcccGgGGCccucggUGCGCUACCg -3'
miRNA:   3'- -GCAGCGGCG---CgUUGuuu---GCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 197032 0.66 0.980969
Target:  5'- aCG-CGCCGCaGgAuCGcACGCGgCUGCCg -3'
miRNA:   3'- -GCaGCGGCG-CgUuGUuUGCGC-GAUGG- -5'
1704 3' -54.1 NC_001347.2 + 196939 0.66 0.980969
Target:  5'- aCGUUuucaaGCUGCGCcggGGCugucGCGCGCcGCCg -3'
miRNA:   3'- -GCAG-----CGGCGCG---UUGuu--UGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 196903 0.86 0.204015
Target:  5'- uGUCGCUGCGCAuCAAGCGCgaGCUGCUg -3'
miRNA:   3'- gCAGCGGCGCGUuGUUUGCG--CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 196734 0.67 0.971375
Target:  5'- gCGcUGCUGCGCAAgGGACuCGCUcagaACCc -3'
miRNA:   3'- -GCaGCGGCGCGUUgUUUGcGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 195834 0.71 0.858295
Target:  5'- uGUCuggGCCGCGCuuCGAgGCGUGCccuUGCCg -3'
miRNA:   3'- gCAG---CGGCGCGuuGUU-UGCGCG---AUGG- -5'
1704 3' -54.1 NC_001347.2 + 194418 0.69 0.921414
Target:  5'- cCGaaGCCGCGCGagcguGCGAGCgggguucaccugcaGCGCUACg -3'
miRNA:   3'- -GCagCGGCGCGU-----UGUUUG--------------CGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 194044 0.66 0.984748
Target:  5'- -uUCG-UGCGCGugGGGCugGCGCUGCUc -3'
miRNA:   3'- gcAGCgGCGCGUugUUUG--CGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 193662 0.68 0.958719
Target:  5'- cCGcCGCuCGCGCGccuccGCucGCGgcCGCUACCu -3'
miRNA:   3'- -GCaGCG-GCGCGU-----UGuuUGC--GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 193180 0.78 0.491791
Target:  5'- gCGUCgGCCGCGUcGCAAACGCuGCUugguACCc -3'
miRNA:   3'- -GCAG-CGGCGCGuUGUUUGCG-CGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 192121 0.66 0.982937
Target:  5'- gGUCGCCGC-CAcCGc-CGuCGUUGCCg -3'
miRNA:   3'- gCAGCGGCGcGUuGUuuGC-GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 191975 0.7 0.90531
Target:  5'- uGUCGCCGCcaccgcagcggcgGCGACGGACG-GCgGCg -3'
miRNA:   3'- gCAGCGGCG-------------CGUUGUUUGCgCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 191782 0.67 0.968513
Target:  5'- uGUgGCgGCacaGCcGCAGGCGCuCUGCCa -3'
miRNA:   3'- gCAgCGgCG---CGuUGUUUGCGcGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 191147 0.66 0.982556
Target:  5'- gCGUCgcgccauGCCGCGUGACGcugacccguccaaAGgGCGCcGCCu -3'
miRNA:   3'- -GCAG-------CGGCGCGUUGU-------------UUgCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 190753 0.67 0.968513
Target:  5'- gCGUCGCCGCuaAAaaagaguGACGgGUUGCg -3'
miRNA:   3'- -GCAGCGGCGcgUUgu-----UUGCgCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 189950 0.7 0.904092
Target:  5'- cCGUCGUCuacggccaaaagcaGCGUAuCGAAUGCGCcGCCu -3'
miRNA:   3'- -GCAGCGG--------------CGCGUuGUUUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 189878 0.68 0.947015
Target:  5'- gGUCGCCuGUccgGCAGCAGcCGgGCcGCCu -3'
miRNA:   3'- gCAGCGG-CG---CGUUGUUuGCgCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 189025 0.71 0.865724
Target:  5'- ---gGCCGCGCGA---ACGCGCguggGCCc -3'
miRNA:   3'- gcagCGGCGCGUUguuUGCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 188627 0.68 0.965454
Target:  5'- cCGUCGggacaGCGCGugGGACGUGagGCCg -3'
miRNA:   3'- -GCAGCgg---CGCGUugUUUGCGCgaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.