miRNA display CGI


Results 41 - 60 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 187774 0.68 0.962191
Target:  5'- uGUCuGgCGCGCAuuCAGGaGCGCUGCa -3'
miRNA:   3'- gCAG-CgGCGCGUu-GUUUgCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 184226 0.66 0.986408
Target:  5'- gGUCGCUagcguGuCGCAGCGuuCGCcgccGUUGCCg -3'
miRNA:   3'- gCAGCGG-----C-GCGUUGUuuGCG----CGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 183103 0.71 0.849899
Target:  5'- uGUUGCCGCGCAaguuccagcccacGCAccAGCGUGacgaaaguCUGCCg -3'
miRNA:   3'- gCAGCGGCGCGU-------------UGU--UUGCGC--------GAUGG- -5'
1704 3' -54.1 NC_001347.2 + 182943 0.72 0.826692
Target:  5'- -cUCGCCGCGCucGCGGGCGUcCgagACCg -3'
miRNA:   3'- gcAGCGGCGCGu-UGUUUGCGcGa--UGG- -5'
1704 3' -54.1 NC_001347.2 + 182117 0.69 0.933308
Target:  5'- uCGUC-CCGCGgGuCuucGACGuCGCUGCCg -3'
miRNA:   3'- -GCAGcGGCGCgUuGu--UUGC-GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 181105 0.7 0.917555
Target:  5'- cCGU-GCCGCGCAucaccuguuaccACcaguuguuGGGCGCGCUggGCCa -3'
miRNA:   3'- -GCAgCGGCGCGU------------UG--------UUUGCGCGA--UGG- -5'
1704 3' -54.1 NC_001347.2 + 180676 0.68 0.955036
Target:  5'- uCGUCGaggguCCGgGCuuu--AUGCGCUACCa -3'
miRNA:   3'- -GCAGC-----GGCgCGuuguuUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 180052 0.67 0.978835
Target:  5'- uGUgGCgGCggGCAGCAu-CGCGUUGCUc -3'
miRNA:   3'- gCAgCGgCG--CGUUGUuuGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 178738 0.69 0.927771
Target:  5'- --aCGCCccgGCGCAACGGGugcugucCGCGCcGCCg -3'
miRNA:   3'- gcaGCGG---CGCGUUGUUU-------GCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 176538 0.66 0.986408
Target:  5'- aCGUUGUugaucgaagUGgGUAACAAcACGCGCcGCCa -3'
miRNA:   3'- -GCAGCG---------GCgCGUUGUU-UGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 174834 0.66 0.980969
Target:  5'- uGgCGCCuGUGCAugAAGCGCGaggguuCCa -3'
miRNA:   3'- gCaGCGG-CGCGUugUUUGCGCgau---GG- -5'
1704 3' -54.1 NC_001347.2 + 174726 0.69 0.942672
Target:  5'- ---gGCCuGCGCAACu-ACGCGCcGCUg -3'
miRNA:   3'- gcagCGG-CGCGUUGuuUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 174428 0.68 0.947015
Target:  5'- -uUCGUCGCGuCAGCGGcACGgUGCUGCg -3'
miRNA:   3'- gcAGCGGCGC-GUUGUU-UGC-GCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 172030 0.68 0.949922
Target:  5'- gGUUGCCGCGgcucuccaucgcCAGC--GCGCGCUgggaagcgcugcgcGCCg -3'
miRNA:   3'- gCAGCGGCGC------------GUUGuuUGCGCGA--------------UGG- -5'
1704 3' -54.1 NC_001347.2 + 169132 0.72 0.842859
Target:  5'- gCG-CGCCGCGCuGCAGugGCuggACCu -3'
miRNA:   3'- -GCaGCGGCGCGuUGUUugCGcgaUGG- -5'
1704 3' -54.1 NC_001347.2 + 169077 0.7 0.911848
Target:  5'- aCGUCuCgGC-CAGC--ACGCGCUGCCu -3'
miRNA:   3'- -GCAGcGgCGcGUUGuuUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 168974 0.75 0.698174
Target:  5'- -uUCGagGCGCAGcCGGGCGCGCUGCUc -3'
miRNA:   3'- gcAGCggCGCGUU-GUUUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 168783 0.68 0.958361
Target:  5'- cCGUgCGCCuCGCcaucaugGACGcGCGCGCggugGCCa -3'
miRNA:   3'- -GCA-GCGGcGCG-------UUGUuUGCGCGa---UGG- -5'
1704 3' -54.1 NC_001347.2 + 167881 0.66 0.980969
Target:  5'- uGagGCCGC-UGGCGucACGCGCUugCa -3'
miRNA:   3'- gCagCGGCGcGUUGUu-UGCGCGAugG- -5'
1704 3' -54.1 NC_001347.2 + 166620 0.67 0.971375
Target:  5'- cCGUcaCGCCGUccucCGAgAGGCGCGCccgGCCa -3'
miRNA:   3'- -GCA--GCGGCGc---GUUgUUUGCGCGa--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.