miRNA display CGI


Results 61 - 80 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1704 3' -54.1 NC_001347.2 + 166138 0.69 0.928285
Target:  5'- gGcCGCCGcCGCAACGccCGUGCccgcggGCCa -3'
miRNA:   3'- gCaGCGGC-GCGUUGUuuGCGCGa-----UGG- -5'
1704 3' -54.1 NC_001347.2 + 165663 0.76 0.598592
Target:  5'- gCGcUCaGCCGCGCGucCAGACGCGC-GCCc -3'
miRNA:   3'- -GC-AG-CGGCGCGUu-GUUUGCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 164693 0.7 0.917555
Target:  5'- cCGUUGCCGCGUu---AGCGcCGCUuucgguacccGCCg -3'
miRNA:   3'- -GCAGCGGCGCGuuguUUGC-GCGA----------UGG- -5'
1704 3' -54.1 NC_001347.2 + 163303 0.7 0.886784
Target:  5'- aCGUCgGUCGCgGCGACucguCGCGC-GCCa -3'
miRNA:   3'- -GCAG-CGGCG-CGUUGuuu-GCGCGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 162100 0.66 0.980969
Target:  5'- uCGUCGCUgaGCGCuuucCGGGcCGCGUcgGCCu -3'
miRNA:   3'- -GCAGCGG--CGCGuu--GUUU-GCGCGa-UGG- -5'
1704 3' -54.1 NC_001347.2 + 161983 0.66 0.986408
Target:  5'- aGUcCGCCGCuCAuuuuGugGCGCgugACCa -3'
miRNA:   3'- gCA-GCGGCGcGUugu-UugCGCGa--UGG- -5'
1704 3' -54.1 NC_001347.2 + 161646 0.67 0.97653
Target:  5'- uGUCGaCC-CGCGGCGugGACGCGCcguugGCg -3'
miRNA:   3'- gCAGC-GGcGCGUUGU--UUGCGCGa----UGg -5'
1704 3' -54.1 NC_001347.2 + 161526 0.68 0.962191
Target:  5'- gGUCGCCuaGCGUcuGACccaaGCGCUGCa -3'
miRNA:   3'- gCAGCGG--CGCG--UUGuuugCGCGAUGg -5'
1704 3' -54.1 NC_001347.2 + 159901 0.75 0.668488
Target:  5'- aGUCGCgGUcucGCGACGuguauucgagguGGCGCGCUACUa -3'
miRNA:   3'- gCAGCGgCG---CGUUGU------------UUGCGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 158710 0.73 0.765191
Target:  5'- aCGUCGgcggccacaUUGUGCAGCAGGCGCGCgGCg -3'
miRNA:   3'- -GCAGC---------GGCGCGUUGUUUGCGCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 158092 0.66 0.986408
Target:  5'- aG-CGCCGCGCu----GCGCgGCgGCCu -3'
miRNA:   3'- gCaGCGGCGCGuuguuUGCG-CGaUGG- -5'
1704 3' -54.1 NC_001347.2 + 158032 0.67 0.971375
Target:  5'- gCGggCGCCG-GaCAGCAGGCGCGUcACg -3'
miRNA:   3'- -GCa-GCGGCgC-GUUGUUUGCGCGaUGg -5'
1704 3' -54.1 NC_001347.2 + 157725 0.66 0.984748
Target:  5'- -cUCGCCGUGCcuAGCAuuacuACGCGCcaaGCg -3'
miRNA:   3'- gcAGCGGCGCG--UUGUu----UGCGCGa--UGg -5'
1704 3' -54.1 NC_001347.2 + 156955 0.71 0.858295
Target:  5'- cCGUCaUCGUgGUGGCGAGCGCGCUccggGCCa -3'
miRNA:   3'- -GCAGcGGCG-CGUUGUUUGCGCGA----UGG- -5'
1704 3' -54.1 NC_001347.2 + 156628 0.77 0.578728
Target:  5'- gGUCGCCGCugGCGGC--GC-CGCUGCCg -3'
miRNA:   3'- gCAGCGGCG--CGUUGuuUGcGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 156534 0.66 0.984748
Target:  5'- uGUCgGCCGCGCuuacGCGAACG-GCg--- -3'
miRNA:   3'- gCAG-CGGCGCGu---UGUUUGCgCGaugg -5'
1704 3' -54.1 NC_001347.2 + 155682 0.68 0.955036
Target:  5'- cCGaugCGCCGCGCGucuACGAucUGuUGCUGCCc -3'
miRNA:   3'- -GCa--GCGGCGCGU---UGUUu-GC-GCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 155137 0.66 0.980969
Target:  5'- gGcCGCCGCgGCGGCca--GCGCUucguCCa -3'
miRNA:   3'- gCaGCGGCG-CGUUGuuugCGCGAu---GG- -5'
1704 3' -54.1 NC_001347.2 + 154626 0.69 0.933308
Target:  5'- uCGUCGauGCGCAGauCGGAaaaGUGCUGCUg -3'
miRNA:   3'- -GCAGCggCGCGUU--GUUUg--CGCGAUGG- -5'
1704 3' -54.1 NC_001347.2 + 153861 0.66 0.986408
Target:  5'- uCGUgUGCCGCGCcgAGCGgcGACGUGCa--- -3'
miRNA:   3'- -GCA-GCGGCGCG--UUGU--UUGCGCGaugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.