Results 81 - 100 of 247 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1704 | 3' | -54.1 | NC_001347.2 | + | 191147 | 0.66 | 0.982556 |
Target: 5'- gCGUCgcgccauGCCGCGUGACGcugacccguccaaAGgGCGCcGCCu -3' miRNA: 3'- -GCAG-------CGGCGCGUUGU-------------UUgCGCGaUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 33467 | 0.66 | 0.982937 |
Target: 5'- uGUCuCCGCGaCAACAAGCuuGUGUU-CCg -3' miRNA: 3'- gCAGcGGCGC-GUUGUUUG--CGCGAuGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 197032 | 0.66 | 0.980969 |
Target: 5'- aCG-CGCCGCaGgAuCGcACGCGgCUGCCg -3' miRNA: 3'- -GCaGCGGCG-CgUuGUuUGCGC-GAUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 196939 | 0.66 | 0.980969 |
Target: 5'- aCGUUuucaaGCUGCGCcggGGCugucGCGCGCcGCCg -3' miRNA: 3'- -GCAG-----CGGCGCG---UUGuu--UGCGCGaUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 155137 | 0.66 | 0.980969 |
Target: 5'- gGcCGCCGCgGCGGCca--GCGCUucguCCa -3' miRNA: 3'- gCaGCGGCG-CGUUGuuugCGCGAu---GG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 167881 | 0.66 | 0.980969 |
Target: 5'- uGagGCCGC-UGGCGucACGCGCUugCa -3' miRNA: 3'- gCagCGGCGcGUUGUu-UGCGCGAugG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 162100 | 0.66 | 0.980969 |
Target: 5'- uCGUCGCUgaGCGCuuucCGGGcCGCGUcgGCCu -3' miRNA: 3'- -GCAGCGG--CGCGuu--GUUU-GCGCGa-UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 66597 | 0.66 | 0.982937 |
Target: 5'- cCGUUGCCG-GCAACu--UGCGaCaACCg -3' miRNA: 3'- -GCAGCGGCgCGUUGuuuGCGC-GaUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 82098 | 0.66 | 0.98422 |
Target: 5'- uCGUCGUCGCGCuccagcACAuacuugugagugccGACGCGaaacgacaugGCCa -3' miRNA: 3'- -GCAGCGGCGCGu-----UGU--------------UUGCGCga--------UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 197552 | 0.66 | 0.982937 |
Target: 5'- gCGUgGCCgGCGUGGCGgccgacggcAGCGUGCUguGCUa -3' miRNA: 3'- -GCAgCGG-CGCGUUGU---------UUGCGCGA--UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 63108 | 0.66 | 0.984748 |
Target: 5'- cCGUgGCCGcCGCGGCc-GC-CGCUgugGCCg -3' miRNA: 3'- -GCAgCGGC-GCGUUGuuUGcGCGA---UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 88283 | 0.66 | 0.984748 |
Target: 5'- aCGUCGCCGuCGCGAUcguACuCGaacgACCa -3' miRNA: 3'- -GCAGCGGC-GCGUUGuu-UGcGCga--UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 89417 | 0.66 | 0.984748 |
Target: 5'- aGcCGCgGCGCAgucuuggauaACGAugGgGCUAUa -3' miRNA: 3'- gCaGCGgCGCGU----------UGUUugCgCGAUGg -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 156534 | 0.66 | 0.984748 |
Target: 5'- uGUCgGCCGCGCuuacGCGAACG-GCg--- -3' miRNA: 3'- gCAG-CGGCGCGu---UGUUUGCgCGaugg -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 149425 | 0.66 | 0.984748 |
Target: 5'- gGUgGCUGUGCccGACGAcagcucgugGcCGCGCUAUCg -3' miRNA: 3'- gCAgCGGCGCG--UUGUU---------U-GCGCGAUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 68497 | 0.66 | 0.984748 |
Target: 5'- -cUCGCCGUGCuGCAuaaugguaGCGCagaGCCa -3' miRNA: 3'- gcAGCGGCGCGuUGUuug-----CGCGa--UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 94289 | 0.66 | 0.984748 |
Target: 5'- aGUcCGCCGCucGCGGuCAAAaGCGCgaucGCCg -3' miRNA: 3'- gCA-GCGGCG--CGUU-GUUUgCGCGa---UGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 145362 | 0.66 | 0.984748 |
Target: 5'- gCGU-GCCuGCGCGACGAAC-UGC-ACCc -3' miRNA: 3'- -GCAgCGG-CGCGUUGUUUGcGCGaUGG- -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 228720 | 0.66 | 0.984748 |
Target: 5'- aGUCGCCaccgcCGCGGCGGAuuucCGCGCgggggACg -3' miRNA: 3'- gCAGCGGc----GCGUUGUUU----GCGCGa----UGg -5' |
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1704 | 3' | -54.1 | NC_001347.2 | + | 41150 | 0.66 | 0.984573 |
Target: 5'- cCGUCccCCGCGCGgaaauccgccgcgGCGGugGCGaCUggGCCg -3' miRNA: 3'- -GCAGc-GGCGCGU-------------UGUUugCGC-GA--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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