miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 40301 0.66 0.666019
Target:  5'- -aGA-CGUgGaCGCGAuggggcGAGCGCGAGCu -3'
miRNA:   3'- agCUaGCGgCgGUGCU------UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 1965 0.66 0.666019
Target:  5'- uUCGAgCGCCuGgCGCuGAuccGGCGCGAGa -3'
miRNA:   3'- -AGCUaGCGG-CgGUG-CUu--UCGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 45165 0.66 0.666019
Target:  5'- uUCGcgCGCuacguCGCgGCGGAcGCGCcGGCg -3'
miRNA:   3'- -AGCuaGCG-----GCGgUGCUUuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 7368 0.66 0.676942
Target:  5'- cUUGAUCaGCU-CCAuCGAcGGgGCGAGCg -3'
miRNA:   3'- -AGCUAG-CGGcGGU-GCUuUCgCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 8857 0.66 0.675852
Target:  5'- -aGcgCGCCGCCGcCGAGcgaaucggcugccAGCcccggGUGAGCa -3'
miRNA:   3'- agCuaGCGGCGGU-GCUU-------------UCG-----CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 34268 0.66 0.670393
Target:  5'- aCGAUCgccacggcaGCCGCCGCGcagcccgugccggccGAcuucgcgcGGCGCGGcGCg -3'
miRNA:   3'- aGCUAG---------CGGCGGUGC---------------UU--------UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 2771 0.67 0.593614
Target:  5'- cCGGUCGCguuCGUCACGAccgugaagcgguuGCGCaGGGCa -3'
miRNA:   3'- aGCUAGCG---GCGGUGCUuu-----------CGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 20515 0.67 0.578347
Target:  5'- cCGGcCGCCGCCGCGccgcuCGCuGGCg -3'
miRNA:   3'- aGCUaGCGGCGGUGCuuuc-GCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 40708 0.67 0.589244
Target:  5'- cCGAUCGCCGCgAuCGucaccGGCgGCG-GCa -3'
miRNA:   3'- aGCUAGCGGCGgU-GCuu---UCG-CGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 18899 0.67 0.589244
Target:  5'- aUCGAagGCCGCCuguuuguGGCGauCGAGCu -3'
miRNA:   3'- -AGCUagCGGCGGugcuu--UCGC--GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6762 0.67 0.589244
Target:  5'- cCGGUCGCgCGCCuCGAGguAGC-CGAucGCa -3'
miRNA:   3'- aGCUAGCG-GCGGuGCUU--UCGcGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 31095 0.67 0.589244
Target:  5'- uUCGG-CGCCugGCC-CGucagcGGCGCGAGUu -3'
miRNA:   3'- -AGCUaGCGG--CGGuGCuu---UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 18426 0.67 0.589244
Target:  5'- gCGAUCGgCGgCGuCGAcacCGCGAGCg -3'
miRNA:   3'- aGCUAGCgGCgGU-GCUuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 15464 0.67 0.589244
Target:  5'- gUCGAUCgGCgCGCUugGcguGC-CGAGCg -3'
miRNA:   3'- -AGCUAG-CG-GCGGugCuuuCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 40199 0.67 0.578347
Target:  5'- cCGAUUcCCGCUuggcacgcuguACGAAGuGCGCGAcGCg -3'
miRNA:   3'- aGCUAGcGGCGG-----------UGCUUU-CGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 9718 0.67 0.578347
Target:  5'- gCGGuUCGCgaaaCGCCGCGucGGCGacauGAGCg -3'
miRNA:   3'- aGCU-AGCG----GCGGUGCuuUCGCg---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 45909 0.67 0.567494
Target:  5'- cUCGAggugcUUGCCgagcugGCCGCGuu-GCGCGAGa -3'
miRNA:   3'- -AGCU-----AGCGG------CGGUGCuuuCGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 26631 0.67 0.567494
Target:  5'- gUUGAUCGuugucgcaCCGCCGCucguGAGCGUGAucGCg -3'
miRNA:   3'- -AGCUAGC--------GGCGGUGcu--UUCGCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 37181 0.67 0.600178
Target:  5'- gCGAcaCGCCGCuCACGAc-GCGCGccGGUg -3'
miRNA:   3'- aGCUa-GCGGCG-GUGCUuuCGCGC--UCG- -5'
17040 3' -55.9 NC_004333.2 + 44552 0.67 0.622116
Target:  5'- -aGGUCGaCUGCUACGGcccgcAGGCGCccgacuGGGCg -3'
miRNA:   3'- agCUAGC-GGCGGUGCU-----UUCGCG------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.