miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 44552 0.67 0.622116
Target:  5'- -aGGUCGaCUGCUACGGcccgcAGGCGCccgacuGGGCg -3'
miRNA:   3'- agCUAGC-GGCGGUGCU-----UUCGCG------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 46674 0.67 0.622116
Target:  5'- cCGAcUCGCCGUCGCuc--GCGCaguucGAGCa -3'
miRNA:   3'- aGCU-AGCGGCGGUGcuuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 9274 0.67 0.622116
Target:  5'- gUUGGccgUGCCGaucagCGCGAAgcGGCGCGGGUg -3'
miRNA:   3'- -AGCUa--GCGGCg----GUGCUU--UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 18899 0.67 0.589244
Target:  5'- aUCGAagGCCGCCuguuuguGGCGauCGAGCu -3'
miRNA:   3'- -AGCUagCGGCGGugcuu--UCGC--GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 33313 0.67 0.622116
Target:  5'- aUCGAgccaaccgGCgCGCCACGGAucagauucguuGCGCGAGa -3'
miRNA:   3'- -AGCUag------CG-GCGGUGCUUu----------CGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 13887 0.67 0.622116
Target:  5'- gCGAagUCgGCCGgCACGGGcuGCGCG-GCg -3'
miRNA:   3'- aGCU--AG-CGGCgGUGCUUu-CGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 2771 0.67 0.593614
Target:  5'- cCGGUCGCguuCGUCACGAccgugaagcgguuGCGCaGGGCa -3'
miRNA:   3'- aGCUAGCG---GCGGUGCUuu-----------CGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 18426 0.67 0.589244
Target:  5'- gCGAUCGgCGgCGuCGAcacCGCGAGCg -3'
miRNA:   3'- aGCUAGCgGCgGU-GCUuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 34529 0.68 0.53528
Target:  5'- cUCGcgCaGCUGCC-CGAGuaccGCGCGAuGCa -3'
miRNA:   3'- -AGCuaG-CGGCGGuGCUUu---CGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 15721 0.68 0.524681
Target:  5'- gCGGcUCGUCGCgGCGcugaAGGGCGcCGAGUa -3'
miRNA:   3'- aGCU-AGCGGCGgUGC----UUUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 15761 0.68 0.514163
Target:  5'- cUCGucaGCgaGCUGCGcGAGGCGCGGGCc -3'
miRNA:   3'- -AGCuagCGg-CGGUGC-UUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30685 0.68 0.514163
Target:  5'- gUCGGU-GCgGUCgaguGCGAGcAGCGUGAGCg -3'
miRNA:   3'- -AGCUAgCGgCGG----UGCUU-UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 20989 0.68 0.514163
Target:  5'- aCGGUCuGCCGCCACaccu-CGgGGGCa -3'
miRNA:   3'- aGCUAG-CGGCGGUGcuuucGCgCUCG- -5'
17040 3' -55.9 NC_004333.2 + 4849 0.68 0.53528
Target:  5'- -aGAUgGCCGUCAUGAuuuccGGCGUcGGCu -3'
miRNA:   3'- agCUAgCGGCGGUGCUu----UCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 6466 0.68 0.523625
Target:  5'- gUUGAUCgcgccguGCCGCC-CGAAGuugccgcccGCGuCGAGCa -3'
miRNA:   3'- -AGCUAG-------CGGCGGuGCUUU---------CGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 27656 0.68 0.524681
Target:  5'- -----gGCCGCCAgCGAGcGGCGCG-GCg -3'
miRNA:   3'- agcuagCGGCGGU-GCUU-UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32252 0.68 0.524681
Target:  5'- cCGAUUGUgGCgGCGAuGGCaccGUGGGCg -3'
miRNA:   3'- aGCUAGCGgCGgUGCUuUCG---CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 3145 0.68 0.53528
Target:  5'- uUUGcgCGCCGCCAgCGccacGCGCggucGAGCg -3'
miRNA:   3'- -AGCuaGCGGCGGU-GCuuu-CGCG----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 13765 0.68 0.545953
Target:  5'- cCGcgCGCCGCuCGCGc-GGCGUGuAGUu -3'
miRNA:   3'- aGCuaGCGGCG-GUGCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 39853 0.68 0.53528
Target:  5'- aCGggCGCguaaCGCauaGCG-GGGCGCGAGCc -3'
miRNA:   3'- aGCuaGCG----GCGg--UGCuUUCGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.