miRNA display CGI


Results 121 - 140 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 9769 0.69 0.493393
Target:  5'- cUCGAUCGCCGUCuuGAccGUgGCcGGCg -3'
miRNA:   3'- -AGCUAGCGGCGGugCUuuCG-CGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 36265 0.69 0.493393
Target:  5'- gCGcgCGCCGCUGCGcauGC-CGGGCc -3'
miRNA:   3'- aGCuaGCGGCGGUGCuuuCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 4718 0.69 0.473016
Target:  5'- uUCGAUUGCgGCgCGCaAgcGCGCGAuGCg -3'
miRNA:   3'- -AGCUAGCGgCG-GUGcUuuCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 29758 0.69 0.473016
Target:  5'- gUCGA-CGCCGCCgaucGCGAGGcguuGCGCuucggacggcacGAGCa -3'
miRNA:   3'- -AGCUaGCGGCGG----UGCUUU----CGCG------------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 24041 0.69 0.462988
Target:  5'- gUGAagGCgGCCGCGAAcauuGCGCGcuGCg -3'
miRNA:   3'- aGCUagCGgCGGUGCUUu---CGCGCu-CG- -5'
17040 3' -55.9 NC_004333.2 + 22255 0.69 0.462988
Target:  5'- cCGcgCGCaauaGCUACGugcAAGCGCaGGGCg -3'
miRNA:   3'- aGCuaGCGg---CGGUGCu--UUCGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 14749 0.69 0.462988
Target:  5'- cCGGacUCGCgGCUACGGuucGGCGCGcAGUc -3'
miRNA:   3'- aGCU--AGCGgCGGUGCUu--UCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 11040 0.69 0.453072
Target:  5'- gUGAUCGCgucgUGCgGCGuGAGCGCuucGAGCa -3'
miRNA:   3'- aGCUAGCG----GCGgUGCuUUCGCG---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 32669 0.69 0.453072
Target:  5'- cUUGAcgCGCCGCCgguGAccGcCGCGAGCa -3'
miRNA:   3'- -AGCUa-GCGGCGGug-CUuuC-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47318 0.69 0.503731
Target:  5'- cUCGcaagCGCCG-CACGAAAGC-CGAGa -3'
miRNA:   3'- -AGCua--GCGGCgGUGCUUUCGcGCUCg -5'
17040 3' -55.9 NC_004333.2 + 11327 0.69 0.493393
Target:  5'- cUGGUCGCgCGCgAUGAAGGCgGCGcGGUu -3'
miRNA:   3'- aGCUAGCG-GCGgUGCUUUCG-CGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 3384 0.69 0.493393
Target:  5'- gUCGAccggCGUCGCCGuCGuc-GCGgGAGCu -3'
miRNA:   3'- -AGCUa---GCGGCGGU-GCuuuCGCgCUCG- -5'
17040 3' -55.9 NC_004333.2 + 40860 0.69 0.483153
Target:  5'- cUGGUCGCCgGCgAUGGucGCGCGAc- -3'
miRNA:   3'- aGCUAGCGG-CGgUGCUuuCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 4869 0.69 0.473016
Target:  5'- cCGAUgccgcUGCCGCCGCuGAccauguAGCGCGcGCu -3'
miRNA:   3'- aGCUA-----GCGGCGGUG-CUu-----UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 13394 0.69 0.469996
Target:  5'- cUGGUCGUCGCCuuugaucuugaaauACGGGuGCGCGcGGCc -3'
miRNA:   3'- aGCUAGCGGCGG--------------UGCUUuCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 1276 0.69 0.453072
Target:  5'- -gGcgCGCCGCCugGc--GCGCGuuGCg -3'
miRNA:   3'- agCuaGCGGCGGugCuuuCGCGCu-CG- -5'
17040 3' -55.9 NC_004333.2 + 2413 0.69 0.453072
Target:  5'- cUGGUCGCCGUacaGCGgcAGCGUGccuugguacGGCg -3'
miRNA:   3'- aGCUAGCGGCGg--UGCuuUCGCGC---------UCG- -5'
17040 3' -55.9 NC_004333.2 + 31230 0.69 0.462988
Target:  5'- cCGGUCGCgacgGCCGCGc-GGCGC-AGCg -3'
miRNA:   3'- aGCUAGCGg---CGGUGCuuUCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 18804 0.69 0.483153
Target:  5'- aUCG--CGCgGCCGC-AGGGCGCGuGCu -3'
miRNA:   3'- -AGCuaGCGgCGGUGcUUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 24082 0.69 0.483153
Target:  5'- cCGAUCGCCGa-ACaucGAGCGCauGAGCg -3'
miRNA:   3'- aGCUAGCGGCggUGcu-UUCGCG--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.