miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 25473 0.71 0.369469
Target:  5'- -gGAUCGUCGCgGCGAcAGC-CGGGUu -3'
miRNA:   3'- agCUAGCGGCGgUGCUuUCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 13455 0.71 0.387118
Target:  5'- aCGGUCGUgcgcaccgCGUCGCGAAuGCGCaGGCg -3'
miRNA:   3'- aGCUAGCG--------GCGGUGCUUuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 38427 0.71 0.393426
Target:  5'- aUCGAgacgcUUGCCGCguCGAAcuuugucgauccguGGCGCGAcGCg -3'
miRNA:   3'- -AGCU-----AGCGGCGguGCUU--------------UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 7321 0.71 0.360853
Target:  5'- gCGAccaUCGCCGgCGaccaGAAGGCGCGcGCc -3'
miRNA:   3'- aGCU---AGCGGCgGUg---CUUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 4085 0.71 0.369469
Target:  5'- gCGAagUCGCCGCCcuuacCGAGcgGGCGCGAc- -3'
miRNA:   3'- aGCU--AGCGGCGGu----GCUU--UCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 47211 0.71 0.377343
Target:  5'- --aGUCGCCGCgACGGgcGCGCuacuuucGAGCg -3'
miRNA:   3'- agcUAGCGGCGgUGCUuuCGCG-------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 29651 0.71 0.352378
Target:  5'- -gGGUUGCCGCCggcuGCGAAGGcCGCuGcAGCg -3'
miRNA:   3'- agCUAGCGGCGG----UGCUUUC-GCG-C-UCG- -5'
17040 3' -55.9 NC_004333.2 + 44593 0.71 0.378224
Target:  5'- aCGAUCGCCGCgAUGu-GGCGCa--- -3'
miRNA:   3'- aGCUAGCGGCGgUGCuuUCGCGcucg -5'
17040 3' -55.9 NC_004333.2 + 45483 0.71 0.396149
Target:  5'- aUCGGccugUCgGCCGCCGCc--GGCGCGAcGCu -3'
miRNA:   3'- -AGCU----AG-CGGCGGUGcuuUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 13848 0.71 0.39524
Target:  5'- aCGggCGCCGCguCGAgcgcauuGAGCGCGccGCg -3'
miRNA:   3'- aGCuaGCGGCGguGCU-------UUCGCGCu-CG- -5'
17040 3' -55.9 NC_004333.2 + 42684 0.71 0.387118
Target:  5'- cCGAUCGUCuCCACGccGGCcGaCGAGCg -3'
miRNA:   3'- aGCUAGCGGcGGUGCuuUCG-C-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 24741 0.71 0.396149
Target:  5'- gUCGAgaaGCCGCuCACGAAcgcGGCGaCGAucGCu -3'
miRNA:   3'- -AGCUag-CGGCG-GUGCUU---UCGC-GCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 35786 0.7 0.424039
Target:  5'- gCGAcacUgGCgCGCCGgGcGGGGCGCGGGCg -3'
miRNA:   3'- aGCU---AgCG-GCGGUgC-UUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 10276 0.7 0.433594
Target:  5'- gCG-UCGCCGagagCGCGAAu-CGCGAGCa -3'
miRNA:   3'- aGCuAGCGGCg---GUGCUUucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 38630 0.7 0.405314
Target:  5'- aCGAUCGgCGCCGCauuGAAGCagcucguCGAGCa -3'
miRNA:   3'- aGCUAGCgGCGGUGc--UUUCGc------GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 88 0.7 0.424039
Target:  5'- cCGGUUGCCGCCugcgccuCGucGGCacCGAGCa -3'
miRNA:   3'- aGCUAGCGGCGGu------GCuuUCGc-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 27745 0.7 0.414612
Target:  5'- uUCG--CGCCGCCGaacguguuuuCGAAGGCGgugaCGAGCg -3'
miRNA:   3'- -AGCuaGCGGCGGU----------GCUUUCGC----GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 16998 0.7 0.424039
Target:  5'- gUCGAguacggcgCGCCGUCugGgcGGCgaugccaagGCGGGCg -3'
miRNA:   3'- -AGCUa-------GCGGCGGugCuuUCG---------CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 32294 0.7 0.433594
Target:  5'- aCGAUgGCgGUCACGgcGGCucgcucGCGGGCu -3'
miRNA:   3'- aGCUAgCGgCGGUGCuuUCG------CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 29618 0.7 0.424039
Target:  5'- uUCGGauUCGCCGCCGCGccGGCuGCc-GCa -3'
miRNA:   3'- -AGCU--AGCGGCGGUGCuuUCG-CGcuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.