miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 88 0.7 0.424039
Target:  5'- cCGGUUGCCGCCugcgccuCGucGGCacCGAGCa -3'
miRNA:   3'- aGCUAGCGGCGGu------GCuuUCGc-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 16998 0.7 0.424039
Target:  5'- gUCGAguacggcgCGCCGUCugGgcGGCgaugccaagGCGGGCg -3'
miRNA:   3'- -AGCUa-------GCGGCGGugCuuUCG---------CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 38630 0.7 0.405314
Target:  5'- aCGAUCGgCGCCGCauuGAAGCagcucguCGAGCa -3'
miRNA:   3'- aGCUAGCgGCGGUGc--UUUCGc------GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 27745 0.7 0.414612
Target:  5'- uUCG--CGCCGCCGaacguguuuuCGAAGGCGgugaCGAGCg -3'
miRNA:   3'- -AGCuaGCGGCGGU----------GCUUUCGC----GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47818 0.7 0.405314
Target:  5'- -aGcgCGCCGCCuGCGGAcGGCGCuucuuuggagguGAGCa -3'
miRNA:   3'- agCuaGCGGCGG-UGCUU-UCGCG------------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 9578 0.7 0.414612
Target:  5'- uUCG-UUGCCGCCACcuucAGCGCcAGCc -3'
miRNA:   3'- -AGCuAGCGGCGGUGcuu-UCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 36300 0.7 0.424039
Target:  5'- gCGAUacgCGCCGCC-CGAGuAGuCGcCGGGCg -3'
miRNA:   3'- aGCUA---GCGGCGGuGCUU-UC-GC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 35786 0.7 0.424039
Target:  5'- gCGAcacUgGCgCGCCGgGcGGGGCGCGGGCg -3'
miRNA:   3'- aGCU---AgCG-GCGGUgC-UUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 11040 0.69 0.453072
Target:  5'- gUGAUCGCgucgUGCgGCGuGAGCGCuucGAGCa -3'
miRNA:   3'- aGCUAGCG----GCGgUGCuUUCGCG---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 19214 0.69 0.453072
Target:  5'- cUGAUCGCCGCguuCGAccGCGUGAacaacGCg -3'
miRNA:   3'- aGCUAGCGGCGgu-GCUuuCGCGCU-----CG- -5'
17040 3' -55.9 NC_004333.2 + 32669 0.69 0.453072
Target:  5'- cUUGAcgCGCCGCCgguGAccGcCGCGAGCa -3'
miRNA:   3'- -AGCUa-GCGGCGGug-CUuuC-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 12170 0.69 0.460001
Target:  5'- cUGAUCGUgauccccaucaaggCGaCCGCGAAccaGGuCGCGAGCa -3'
miRNA:   3'- aGCUAGCG--------------GC-GGUGCUU---UC-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 28289 0.69 0.503731
Target:  5'- -gGAUgGCCcagaGCUGCu-GAGCGCGGGCg -3'
miRNA:   3'- agCUAgCGG----CGGUGcuUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 9769 0.69 0.493393
Target:  5'- cUCGAUCGCCGUCuuGAccGUgGCcGGCg -3'
miRNA:   3'- -AGCUAGCGGCGGugCUuuCG-CGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 18283 0.69 0.483153
Target:  5'- cCGcgCGCgGCC-CGAucGCGC-AGCg -3'
miRNA:   3'- aGCuaGCGgCGGuGCUuuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 4718 0.69 0.473016
Target:  5'- uUCGAUUGCgGCgCGCaAgcGCGCGAuGCg -3'
miRNA:   3'- -AGCUAGCGgCG-GUGcUuuCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 24953 0.69 0.462988
Target:  5'- gCGuUCGCCGCCGUGAucaagacGGCgGCGGGUa -3'
miRNA:   3'- aGCuAGCGGCGGUGCUu------UCG-CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 22255 0.69 0.462988
Target:  5'- cCGcgCGCaauaGCUACGugcAAGCGCaGGGCg -3'
miRNA:   3'- aGCuaGCGg---CGGUGCu--UUCGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 14749 0.69 0.462988
Target:  5'- cCGGacUCGCgGCUACGGuucGGCGCGcAGUc -3'
miRNA:   3'- aGCU--AGCGgCGGUGCUu--UCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 36265 0.69 0.493393
Target:  5'- gCGcgCGCCGCUGCGcauGC-CGGGCc -3'
miRNA:   3'- aGCuaGCGGCGGUGCuuuCGcGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.