Results 81 - 100 of 211 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 24082 | 0.69 | 0.483153 |
Target: 5'- cCGAUCGCCGa-ACaucGAGCGCauGAGCg -3' miRNA: 3'- aGCUAGCGGCggUGcu-UUCGCG--CUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 18804 | 0.69 | 0.483153 |
Target: 5'- aUCG--CGCgGCCGC-AGGGCGCGuGCu -3' miRNA: 3'- -AGCuaGCGgCGGUGcUUUCGCGCuCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 4869 | 0.69 | 0.473016 |
Target: 5'- cCGAUgccgcUGCCGCCGCuGAccauguAGCGCGcGCu -3' miRNA: 3'- aGCUA-----GCGGCGGUG-CUu-----UCGCGCuCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 2413 | 0.69 | 0.453072 |
Target: 5'- cUGGUCGCCGUacaGCGgcAGCGUGccuugguacGGCg -3' miRNA: 3'- aGCUAGCGGCGg--UGCuuUCGCGC---------UCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 36265 | 0.69 | 0.493393 |
Target: 5'- gCGcgCGCCGCUGCGcauGC-CGGGCc -3' miRNA: 3'- aGCuaGCGGCGGUGCuuuCGcGCUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 18283 | 0.69 | 0.483153 |
Target: 5'- cCGcgCGCgGCC-CGAucGCGC-AGCg -3' miRNA: 3'- aGCuaGCGgCGGuGCUuuCGCGcUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 19214 | 0.69 | 0.453072 |
Target: 5'- cUGAUCGCCGCguuCGAccGCGUGAacaacGCg -3' miRNA: 3'- aGCUAGCGGCGgu-GCUuuCGCGCU-----CG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 32669 | 0.69 | 0.453072 |
Target: 5'- cUUGAcgCGCCGCCgguGAccGcCGCGAGCa -3' miRNA: 3'- -AGCUa-GCGGCGGug-CUuuC-GCGCUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 12170 | 0.69 | 0.460001 |
Target: 5'- cUGAUCGUgauccccaucaaggCGaCCGCGAAccaGGuCGCGAGCa -3' miRNA: 3'- aGCUAGCG--------------GC-GGUGCUU---UC-GCGCUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 14749 | 0.69 | 0.462988 |
Target: 5'- cCGGacUCGCgGCUACGGuucGGCGCGcAGUc -3' miRNA: 3'- aGCU--AGCGgCGGUGCUu--UCGCGC-UCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 22255 | 0.69 | 0.462988 |
Target: 5'- cCGcgCGCaauaGCUACGugcAAGCGCaGGGCg -3' miRNA: 3'- aGCuaGCGg---CGGUGCu--UUCGCG-CUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 24953 | 0.69 | 0.462988 |
Target: 5'- gCGuUCGCCGCCGUGAucaagacGGCgGCGGGUa -3' miRNA: 3'- aGCuAGCGGCGGUGCUu------UCG-CGCUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 8143 | 0.69 | 0.462988 |
Target: 5'- gCGAggcguccgCGCCGUgGCGcc-GCGCGAGUu -3' miRNA: 3'- aGCUa-------GCGGCGgUGCuuuCGCGCUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 29758 | 0.69 | 0.473016 |
Target: 5'- gUCGA-CGCCGCCgaucGCGAGGcguuGCGCuucggacggcacGAGCa -3' miRNA: 3'- -AGCUaGCGGCGG----UGCUUU----CGCG------------CUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 4718 | 0.69 | 0.473016 |
Target: 5'- uUCGAUUGCgGCgCGCaAgcGCGCGAuGCg -3' miRNA: 3'- -AGCUAGCGgCG-GUGcUuuCGCGCU-CG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 1276 | 0.69 | 0.453072 |
Target: 5'- -gGcgCGCCGCCugGc--GCGCGuuGCg -3' miRNA: 3'- agCuaGCGGCGGugCuuuCGCGCu-CG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 6466 | 0.68 | 0.523625 |
Target: 5'- gUUGAUCgcgccguGCCGCC-CGAAGuugccgcccGCGuCGAGCa -3' miRNA: 3'- -AGCUAG-------CGGCGGuGCUUU---------CGC-GCUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 20989 | 0.68 | 0.514163 |
Target: 5'- aCGGUCuGCCGCCACaccu-CGgGGGCa -3' miRNA: 3'- aGCUAG-CGGCGGUGcuuucGCgCUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 30685 | 0.68 | 0.514163 |
Target: 5'- gUCGGU-GCgGUCgaguGCGAGcAGCGUGAGCg -3' miRNA: 3'- -AGCUAgCGgCGG----UGCUU-UCGCGCUCG- -5' |
|||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 15761 | 0.68 | 0.514163 |
Target: 5'- cUCGucaGCgaGCUGCGcGAGGCGCGGGCc -3' miRNA: 3'- -AGCuagCGg-CGGUGC-UUUCGCGCUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home