miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 36300 0.7 0.424039
Target:  5'- gCGAUacgCGCCGCC-CGAGuAGuCGcCGGGCg -3'
miRNA:   3'- aGCUA---GCGGCGGuGCUU-UC-GC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 19787 0.7 0.433594
Target:  5'- -gGAUCGU-GCCGCGcguuGAGUGCGAuGCg -3'
miRNA:   3'- agCUAGCGgCGGUGCu---UUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 6551 0.7 0.433594
Target:  5'- cCGAcaaUCuGCCGCCagagcacgaGCGAgcGCGUGGGCc -3'
miRNA:   3'- aGCU---AG-CGGCGG---------UGCUuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30760 0.7 0.433594
Target:  5'- uUUGAUCGUCagcgcgucguGaCCGCGcu-GCGCGAGCa -3'
miRNA:   3'- -AGCUAGCGG----------C-GGUGCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 33913 0.7 0.433594
Target:  5'- cUCGAaggcgUGCCGCCGCuGGcucgaaagAGGCGCGcGCg -3'
miRNA:   3'- -AGCUa----GCGGCGGUG-CU--------UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32294 0.7 0.433594
Target:  5'- aCGAUgGCgGUCACGgcGGCucgcucGCGGGCu -3'
miRNA:   3'- aGCUAgCGgCGGUGCuuUCG------CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 10276 0.7 0.433594
Target:  5'- gCG-UCGCCGagagCGCGAAu-CGCGAGCa -3'
miRNA:   3'- aGCuAGCGGCg---GUGCUUucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 18600 0.7 0.433594
Target:  5'- ----aCGaCCGgCGCGGcAGGCGCGGGCg -3'
miRNA:   3'- agcuaGC-GGCgGUGCU-UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 1276 0.69 0.453072
Target:  5'- -gGcgCGCCGCCugGc--GCGCGuuGCg -3'
miRNA:   3'- agCuaGCGGCGGugCuuuCGCGCu-CG- -5'
17040 3' -55.9 NC_004333.2 + 11040 0.69 0.453072
Target:  5'- gUGAUCGCgucgUGCgGCGuGAGCGCuucGAGCa -3'
miRNA:   3'- aGCUAGCG----GCGgUGCuUUCGCG---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 19214 0.69 0.453072
Target:  5'- cUGAUCGCCGCguuCGAccGCGUGAacaacGCg -3'
miRNA:   3'- aGCUAGCGGCGgu-GCUuuCGCGCU-----CG- -5'
17040 3' -55.9 NC_004333.2 + 32669 0.69 0.453072
Target:  5'- cUUGAcgCGCCGCCgguGAccGcCGCGAGCa -3'
miRNA:   3'- -AGCUa-GCGGCGGug-CUuuC-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 2413 0.69 0.453072
Target:  5'- cUGGUCGCCGUacaGCGgcAGCGUGccuugguacGGCg -3'
miRNA:   3'- aGCUAGCGGCGg--UGCuuUCGCGC---------UCG- -5'
17040 3' -55.9 NC_004333.2 + 12170 0.69 0.460001
Target:  5'- cUGAUCGUgauccccaucaaggCGaCCGCGAAccaGGuCGCGAGCa -3'
miRNA:   3'- aGCUAGCG--------------GC-GGUGCUU---UC-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 12410 0.69 0.462988
Target:  5'- --uGUCGCCGCCuuCGGccAAGCGCuggacguagguGAGCa -3'
miRNA:   3'- agcUAGCGGCGGu-GCU--UUCGCG-----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 24041 0.69 0.462988
Target:  5'- gUGAagGCgGCCGCGAAcauuGCGCGcuGCg -3'
miRNA:   3'- aGCUagCGgCGGUGCUUu---CGCGCu-CG- -5'
17040 3' -55.9 NC_004333.2 + 8143 0.69 0.462988
Target:  5'- gCGAggcguccgCGCCGUgGCGcc-GCGCGAGUu -3'
miRNA:   3'- aGCUa-------GCGGCGgUGCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 24953 0.69 0.462988
Target:  5'- gCGuUCGCCGCCGUGAucaagacGGCgGCGGGUa -3'
miRNA:   3'- aGCuAGCGGCGGUGCUu------UCG-CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 22255 0.69 0.462988
Target:  5'- cCGcgCGCaauaGCUACGugcAAGCGCaGGGCg -3'
miRNA:   3'- aGCuaGCGg---CGGUGCu--UUCGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 14749 0.69 0.462988
Target:  5'- cCGGacUCGCgGCUACGGuucGGCGCGcAGUc -3'
miRNA:   3'- aGCU--AGCGgCGGUGCUu--UCGCGC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.