miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 14749 0.69 0.462988
Target:  5'- cCGGacUCGCgGCUACGGuucGGCGCGcAGUc -3'
miRNA:   3'- aGCU--AGCGgCGGUGCUu--UCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 13394 0.69 0.469996
Target:  5'- cUGGUCGUCGCCuuugaucuugaaauACGGGuGCGCGcGGCc -3'
miRNA:   3'- aGCUAGCGGCGG--------------UGCUUuCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 4869 0.69 0.473016
Target:  5'- cCGAUgccgcUGCCGCCGCuGAccauguAGCGCGcGCu -3'
miRNA:   3'- aGCUA-----GCGGCGGUG-CUu-----UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 29758 0.69 0.473016
Target:  5'- gUCGA-CGCCGCCgaucGCGAGGcguuGCGCuucggacggcacGAGCa -3'
miRNA:   3'- -AGCUaGCGGCGG----UGCUUU----CGCG------------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 4718 0.69 0.473016
Target:  5'- uUCGAUUGCgGCgCGCaAgcGCGCGAuGCg -3'
miRNA:   3'- -AGCUAGCGgCG-GUGcUuuCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 18283 0.69 0.483153
Target:  5'- cCGcgCGCgGCC-CGAucGCGC-AGCg -3'
miRNA:   3'- aGCuaGCGgCGGuGCUuuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 40860 0.69 0.483153
Target:  5'- cUGGUCGCCgGCgAUGGucGCGCGAc- -3'
miRNA:   3'- aGCUAGCGG-CGgUGCUuuCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 18804 0.69 0.483153
Target:  5'- aUCG--CGCgGCCGC-AGGGCGCGuGCu -3'
miRNA:   3'- -AGCuaGCGgCGGUGcUUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 24082 0.69 0.483153
Target:  5'- cCGAUCGCCGa-ACaucGAGCGCauGAGCg -3'
miRNA:   3'- aGCUAGCGGCggUGcu-UUCGCG--CUCG- -5'
17040 3' -55.9 NC_004333.2 + 11327 0.69 0.493393
Target:  5'- cUGGUCGCgCGCgAUGAAGGCgGCGcGGUu -3'
miRNA:   3'- aGCUAGCG-GCGgUGCUUUCG-CGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 9769 0.69 0.493393
Target:  5'- cUCGAUCGCCGUCuuGAccGUgGCcGGCg -3'
miRNA:   3'- -AGCUAGCGGCGGugCUuuCG-CGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 3384 0.69 0.493393
Target:  5'- gUCGAccggCGUCGCCGuCGuc-GCGgGAGCu -3'
miRNA:   3'- -AGCUa---GCGGCGGU-GCuuuCGCgCUCG- -5'
17040 3' -55.9 NC_004333.2 + 36265 0.69 0.493393
Target:  5'- gCGcgCGCCGCUGCGcauGC-CGGGCc -3'
miRNA:   3'- aGCuaGCGGCGGUGCuuuCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 28289 0.69 0.503731
Target:  5'- -gGAUgGCCcagaGCUGCu-GAGCGCGGGCg -3'
miRNA:   3'- agCUAgCGG----CGGUGcuUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47318 0.69 0.503731
Target:  5'- cUCGcaagCGCCG-CACGAAAGC-CGAGa -3'
miRNA:   3'- -AGCua--GCGGCgGUGCUUUCGcGCUCg -5'
17040 3' -55.9 NC_004333.2 + 3005 0.69 0.503731
Target:  5'- cCGGcgCGuCCGCCGCGAcguAGCGCGcGa -3'
miRNA:   3'- aGCUa-GC-GGCGGUGCUu--UCGCGCuCg -5'
17040 3' -55.9 NC_004333.2 + 29831 0.68 0.511024
Target:  5'- aUCGccgCGCCGCCAgucgacugaucguuCGcagcGAAGCGCGcGCg -3'
miRNA:   3'- -AGCua-GCGGCGGU--------------GC----UUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 20989 0.68 0.514163
Target:  5'- aCGGUCuGCCGCCACaccu-CGgGGGCa -3'
miRNA:   3'- aGCUAG-CGGCGGUGcuuucGCgCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30685 0.68 0.514163
Target:  5'- gUCGGU-GCgGUCgaguGCGAGcAGCGUGAGCg -3'
miRNA:   3'- -AGCUAgCGgCGG----UGCUU-UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 15761 0.68 0.514163
Target:  5'- cUCGucaGCgaGCUGCGcGAGGCGCGGGCc -3'
miRNA:   3'- -AGCuagCGg-CGGUGC-UUUCGCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.