miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 29413 0.68 0.514163
Target:  5'- cCGuUCGCCGUCGCG---GCGCuGGCu -3'
miRNA:   3'- aGCuAGCGGCGGUGCuuuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 22003 0.68 0.514163
Target:  5'- ----gCGUCGgCGCGAAucagcGCGCGGGCg -3'
miRNA:   3'- agcuaGCGGCgGUGCUUu----CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6466 0.68 0.523625
Target:  5'- gUUGAUCgcgccguGCCGCC-CGAAGuugccgcccGCGuCGAGCa -3'
miRNA:   3'- -AGCUAG-------CGGCGGuGCUUU---------CGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 27656 0.68 0.524681
Target:  5'- -----gGCCGCCAgCGAGcGGCGCG-GCg -3'
miRNA:   3'- agcuagCGGCGGU-GCUU-UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 15721 0.68 0.524681
Target:  5'- gCGGcUCGUCGCgGCGcugaAGGGCGcCGAGUa -3'
miRNA:   3'- aGCU-AGCGGCGgUGC----UUUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 4635 0.68 0.524681
Target:  5'- aUUGAgCGCCaUCGCGAucauGGCGaCGGGCa -3'
miRNA:   3'- -AGCUaGCGGcGGUGCUu---UCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 32252 0.68 0.524681
Target:  5'- cCGAUUGUgGCgGCGAuGGCaccGUGGGCg -3'
miRNA:   3'- aGCUAGCGgCGgUGCUuUCG---CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6640 0.68 0.524681
Target:  5'- cUCGAUCG-CGCU-CGgcAGCGCGcucGGCg -3'
miRNA:   3'- -AGCUAGCgGCGGuGCuuUCGCGC---UCG- -5'
17040 3' -55.9 NC_004333.2 + 28662 0.68 0.524681
Target:  5'- -gGAUCGCgGUCGCaGAAuuccGGUGCGuGCu -3'
miRNA:   3'- agCUAGCGgCGGUG-CUU----UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 14329 0.68 0.524681
Target:  5'- cCGuUCGCCGCCucuuCGAuguagacGCGCGAcacgGCg -3'
miRNA:   3'- aGCuAGCGGCGGu---GCUuu-----CGCGCU----CG- -5'
17040 3' -55.9 NC_004333.2 + 44865 0.68 0.528911
Target:  5'- -aGAUCGCCGCgCGCGAcAAccugcccgacucgcuGCGCcAGCu -3'
miRNA:   3'- agCUAGCGGCG-GUGCU-UU---------------CGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 3145 0.68 0.53528
Target:  5'- uUUGcgCGCCGCCAgCGccacGCGCggucGAGCg -3'
miRNA:   3'- -AGCuaGCGGCGGU-GCuuu-CGCG----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 46862 0.68 0.53528
Target:  5'- aUCGA-CGCCGUgcgcuCGAAAGaaaccgagugcCGCGAGCg -3'
miRNA:   3'- -AGCUaGCGGCGgu---GCUUUC-----------GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 39853 0.68 0.53528
Target:  5'- aCGggCGCguaaCGCauaGCG-GGGCGCGAGCc -3'
miRNA:   3'- aGCuaGCG----GCGg--UGCuUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 34529 0.68 0.53528
Target:  5'- cUCGcgCaGCUGCC-CGAGuaccGCGCGAuGCa -3'
miRNA:   3'- -AGCuaG-CGGCGGuGCUUu---CGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 4849 0.68 0.53528
Target:  5'- -aGAUgGCCGUCAUGAuuuccGGCGUcGGCu -3'
miRNA:   3'- agCUAgCGGCGGUGCUu----UCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 29364 0.68 0.542744
Target:  5'- uUCGAUagcagcacgcgcccUGCgGCCGCGcgauAAGCGCGguucAGCg -3'
miRNA:   3'- -AGCUA--------------GCGgCGGUGCu---UUCGCGC----UCG- -5'
17040 3' -55.9 NC_004333.2 + 33030 0.68 0.545953
Target:  5'- gUCGAUCGCuuugagCGCCGCac--GUGCGuAGCg -3'
miRNA:   3'- -AGCUAGCG------GCGGUGcuuuCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 13765 0.68 0.545953
Target:  5'- cCGcgCGCCGCuCGCGc-GGCGUGuAGUu -3'
miRNA:   3'- aGCuaGCGGCG-GUGCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 13593 0.68 0.545953
Target:  5'- cCGAUCGCuuCGCCccaaguGCGGAuGCacucgucgGCGAGCa -3'
miRNA:   3'- aGCUAGCG--GCGG------UGCUUuCG--------CGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.