Results 121 - 140 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 43044 | 0.68 | 0.554541 |
Target: 5'- gCGGcUCGcCCGUgACGGAcgacaaugugcuGCGCGAGCu -3' miRNA: 3'- aGCU-AGC-GGCGgUGCUUu-----------CGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 21103 | 0.68 | 0.556694 |
Target: 5'- aCGAaCGCCGUCGgucUGAuguuCGCGAGCg -3' miRNA: 3'- aGCUaGCGGCGGU---GCUuuc-GCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 47716 | 0.68 | 0.556694 |
Target: 5'- aCGcUCGCCGgCACGuc-GCGCGccguGGCc -3' miRNA: 3'- aGCuAGCGGCgGUGCuuuCGCGC----UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 41311 | 0.67 | 0.566412 |
Target: 5'- cCGAgcUCGCCcgGCgCGCGAuggacguGAcGCGCGAGUg -3' miRNA: 3'- aGCU--AGCGG--CG-GUGCU-------UU-CGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 26631 | 0.67 | 0.567494 |
Target: 5'- gUUGAUCGuugucgcaCCGCCGCucguGAGCGUGAucGCg -3' miRNA: 3'- -AGCUAGC--------GGCGGUGcu--UUCGCGCU--CG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 45909 | 0.67 | 0.567494 |
Target: 5'- cUCGAggugcUUGCCgagcugGCCGCGuu-GCGCGAGa -3' miRNA: 3'- -AGCU-----AGCGG------CGGUGCuuuCGCGCUCg -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 21055 | 0.67 | 0.567494 |
Target: 5'- uUCGAagCGCaguuCCACGAGGGuCGCGcGCa -3' miRNA: 3'- -AGCUa-GCGgc--GGUGCUUUC-GCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 10762 | 0.67 | 0.567494 |
Target: 5'- aCG--UGCaCGCCGCGcAAAcCGCGAGCg -3' miRNA: 3'- aGCuaGCG-GCGGUGC-UUUcGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 15271 | 0.67 | 0.567494 |
Target: 5'- aCGAUUuGCCguGCUGCGgcGGCGCGgucAGCa -3' miRNA: 3'- aGCUAG-CGG--CGGUGCuuUCGCGC---UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 20515 | 0.67 | 0.578347 |
Target: 5'- cCGGcCGCCGCCGCGccgcuCGCuGGCg -3' miRNA: 3'- aGCUaGCGGCGGUGCuuuc-GCGcUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 22106 | 0.67 | 0.578347 |
Target: 5'- cCGGaagCGCCGCCGCugcGGCGCcacuGGCa -3' miRNA: 3'- aGCUa--GCGGCGGUGcuuUCGCGc---UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 22507 | 0.67 | 0.578347 |
Target: 5'- -aGGUCGCCGCguuCGCGAcGGC-CG-GCa -3' miRNA: 3'- agCUAGCGGCG---GUGCUuUCGcGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 27000 | 0.67 | 0.578347 |
Target: 5'- cCGAgcagGCCgGCCuGCGgcAGCGCGaAGCg -3' miRNA: 3'- aGCUag--CGG-CGG-UGCuuUCGCGC-UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 40199 | 0.67 | 0.578347 |
Target: 5'- cCGAUUcCCGCUuggcacgcuguACGAAGuGCGCGAcGCg -3' miRNA: 3'- aGCUAGcGGCGG-----------UGCUUU-CGCGCU-CG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 9718 | 0.67 | 0.578347 |
Target: 5'- gCGGuUCGCgaaaCGCCGCGucGGCGacauGAGCg -3' miRNA: 3'- aGCU-AGCG----GCGGUGCuuUCGCg---CUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 15464 | 0.67 | 0.589244 |
Target: 5'- gUCGAUCgGCgCGCUugGcguGC-CGAGCg -3' miRNA: 3'- -AGCUAG-CG-GCGGugCuuuCGcGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28750 | 0.67 | 0.589244 |
Target: 5'- aCGcgCGUgaaCGUCGCGGGuAGCGCG-GCg -3' miRNA: 3'- aGCuaGCG---GCGGUGCUU-UCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 18426 | 0.67 | 0.589244 |
Target: 5'- gCGAUCGgCGgCGuCGAcacCGCGAGCg -3' miRNA: 3'- aGCUAGCgGCgGU-GCUuucGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 6762 | 0.67 | 0.589244 |
Target: 5'- cCGGUCGCgCGCCuCGAGguAGC-CGAucGCa -3' miRNA: 3'- aGCUAGCG-GCGGuGCUU--UCGcGCU--CG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 31095 | 0.67 | 0.589244 |
Target: 5'- uUCGG-CGCCugGCC-CGucagcGGCGCGAGUu -3' miRNA: 3'- -AGCUaGCGG--CGGuGCuu---UCGCGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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