miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 26447 0.67 0.600178
Target:  5'- gUCGAacuUCGCUGCguCGAGcugcuGGCGCacgugcgcauaGAGCg -3'
miRNA:   3'- -AGCU---AGCGGCGguGCUU-----UCGCG-----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 42763 0.67 0.600178
Target:  5'- aCGA-CGCUGCCGCGAuGGCagaagaacGCGAa- -3'
miRNA:   3'- aGCUaGCGGCGGUGCUuUCG--------CGCUcg -5'
17040 3' -55.9 NC_004333.2 + 15567 0.67 0.600178
Target:  5'- gUCGAa-GCCGCaCGCGAAuaCGCGGcGCg -3'
miRNA:   3'- -AGCUagCGGCG-GUGCUUucGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 41525 0.67 0.600178
Target:  5'- cUCGAgcgCGCCGagCGCGcugccGAGCGCGAu- -3'
miRNA:   3'- -AGCUa--GCGGCg-GUGCu----UUCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 40027 0.67 0.600178
Target:  5'- cUCGcgCGgCGCCACG---GCGCGGacGCc -3'
miRNA:   3'- -AGCuaGCgGCGGUGCuuuCGCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 10168 0.67 0.600178
Target:  5'- -gGGUCGgCGCaCugGAagccGAGCgacGCGGGCa -3'
miRNA:   3'- agCUAGCgGCG-GugCU----UUCG---CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 44379 0.67 0.600178
Target:  5'- -aGGUgCGCUGCU-CGgcGGCGCGuGCg -3'
miRNA:   3'- agCUA-GCGGCGGuGCuuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 37181 0.67 0.600178
Target:  5'- gCGAcaCGCCGCuCACGAc-GCGCGccGGUg -3'
miRNA:   3'- aGCUa-GCGGCG-GUGCUuuCGCGC--UCG- -5'
17040 3' -55.9 NC_004333.2 + 2771 0.67 0.593614
Target:  5'- cCGGUCGCguuCGUCACGAccgugaagcgguuGCGCaGGGCa -3'
miRNA:   3'- aGCUAGCG---GCGGUGCUuu-----------CGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 6762 0.67 0.589244
Target:  5'- cCGGUCGCgCGCCuCGAGguAGC-CGAucGCa -3'
miRNA:   3'- aGCUAGCG-GCGGuGCUU--UCGcGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 40708 0.67 0.589244
Target:  5'- cCGAUCGCCGCgAuCGucaccGGCgGCG-GCa -3'
miRNA:   3'- aGCUAGCGGCGgU-GCuu---UCG-CGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 15464 0.67 0.589244
Target:  5'- gUCGAUCgGCgCGCUugGcguGC-CGAGCg -3'
miRNA:   3'- -AGCUAG-CG-GCGGugCuuuCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 31095 0.67 0.589244
Target:  5'- uUCGG-CGCCugGCC-CGucagcGGCGCGAGUu -3'
miRNA:   3'- -AGCUaGCGG--CGGuGCuu---UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 18426 0.67 0.589244
Target:  5'- gCGAUCGgCGgCGuCGAcacCGCGAGCg -3'
miRNA:   3'- aGCUAGCgGCgGU-GCUuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 28750 0.67 0.589244
Target:  5'- aCGcgCGUgaaCGUCGCGGGuAGCGCG-GCg -3'
miRNA:   3'- aGCuaGCG---GCGGUGCUU-UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 18899 0.67 0.589244
Target:  5'- aUCGAagGCCGCCuguuuguGGCGauCGAGCu -3'
miRNA:   3'- -AGCUagCGGCGGugcuu--UCGC--GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 27000 0.67 0.578347
Target:  5'- cCGAgcagGCCgGCCuGCGgcAGCGCGaAGCg -3'
miRNA:   3'- aGCUag--CGG-CGG-UGCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 22106 0.67 0.578347
Target:  5'- cCGGaagCGCCGCCGCugcGGCGCcacuGGCa -3'
miRNA:   3'- aGCUa--GCGGCGGUGcuuUCGCGc---UCG- -5'
17040 3' -55.9 NC_004333.2 + 9718 0.67 0.578347
Target:  5'- gCGGuUCGCgaaaCGCCGCGucGGCGacauGAGCg -3'
miRNA:   3'- aGCU-AGCG----GCGGUGCuuUCGCg---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 22507 0.67 0.578347
Target:  5'- -aGGUCGCCGCguuCGCGAcGGC-CG-GCa -3'
miRNA:   3'- agCUAGCGGCG---GUGCUuUCGcGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.