miRNA display CGI


Results 81 - 100 of 211 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 9718 0.67 0.578347
Target:  5'- gCGGuUCGCgaaaCGCCGCGucGGCGacauGAGCg -3'
miRNA:   3'- aGCU-AGCG----GCGGUGCuuUCGCg---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 27000 0.67 0.578347
Target:  5'- cCGAgcagGCCgGCCuGCGgcAGCGCGaAGCg -3'
miRNA:   3'- aGCUag--CGG-CGG-UGCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 10762 0.67 0.567494
Target:  5'- aCG--UGCaCGCCGCGcAAAcCGCGAGCg -3'
miRNA:   3'- aGCuaGCG-GCGGUGC-UUUcGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 26631 0.67 0.567494
Target:  5'- gUUGAUCGuugucgcaCCGCCGCucguGAGCGUGAucGCg -3'
miRNA:   3'- -AGCUAGC--------GGCGGUGcu--UUCGCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 21055 0.67 0.567494
Target:  5'- uUCGAagCGCaguuCCACGAGGGuCGCGcGCa -3'
miRNA:   3'- -AGCUa-GCGgc--GGUGCUUUC-GCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 45909 0.67 0.567494
Target:  5'- cUCGAggugcUUGCCgagcugGCCGCGuu-GCGCGAGa -3'
miRNA:   3'- -AGCU-----AGCGG------CGGUGCuuuCGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 15271 0.67 0.567494
Target:  5'- aCGAUUuGCCguGCUGCGgcGGCGCGgucAGCa -3'
miRNA:   3'- aGCUAG-CGG--CGGUGCuuUCGCGC---UCG- -5'
17040 3' -55.9 NC_004333.2 + 41311 0.67 0.566412
Target:  5'- cCGAgcUCGCCcgGCgCGCGAuggacguGAcGCGCGAGUg -3'
miRNA:   3'- aGCU--AGCGG--CG-GUGCU-------UU-CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 21103 0.68 0.556694
Target:  5'- aCGAaCGCCGUCGgucUGAuguuCGCGAGCg -3'
miRNA:   3'- aGCUaGCGGCGGU---GCUuuc-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 47716 0.68 0.556694
Target:  5'- aCGcUCGCCGgCACGuc-GCGCGccguGGCc -3'
miRNA:   3'- aGCuAGCGGCgGUGCuuuCGCGC----UCG- -5'
17040 3' -55.9 NC_004333.2 + 43044 0.68 0.554541
Target:  5'- gCGGcUCGcCCGUgACGGAcgacaaugugcuGCGCGAGCu -3'
miRNA:   3'- aGCU-AGC-GGCGgUGCUUu-----------CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 33030 0.68 0.545953
Target:  5'- gUCGAUCGCuuugagCGCCGCac--GUGCGuAGCg -3'
miRNA:   3'- -AGCUAGCG------GCGGUGcuuuCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 13593 0.68 0.545953
Target:  5'- cCGAUCGCuuCGCCccaaguGCGGAuGCacucgucgGCGAGCa -3'
miRNA:   3'- aGCUAGCG--GCGG------UGCUUuCG--------CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 13765 0.68 0.545953
Target:  5'- cCGcgCGCCGCuCGCGc-GGCGUGuAGUu -3'
miRNA:   3'- aGCuaGCGGCG-GUGCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 29364 0.68 0.542744
Target:  5'- uUCGAUagcagcacgcgcccUGCgGCCGCGcgauAAGCGCGguucAGCg -3'
miRNA:   3'- -AGCUA--------------GCGgCGGUGCu---UUCGCGC----UCG- -5'
17040 3' -55.9 NC_004333.2 + 34529 0.68 0.53528
Target:  5'- cUCGcgCaGCUGCC-CGAGuaccGCGCGAuGCa -3'
miRNA:   3'- -AGCuaG-CGGCGGuGCUUu---CGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 39853 0.68 0.53528
Target:  5'- aCGggCGCguaaCGCauaGCG-GGGCGCGAGCc -3'
miRNA:   3'- aGCuaGCG----GCGg--UGCuUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 3145 0.68 0.53528
Target:  5'- uUUGcgCGCCGCCAgCGccacGCGCggucGAGCg -3'
miRNA:   3'- -AGCuaGCGGCGGU-GCuuu-CGCG----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 46862 0.68 0.53528
Target:  5'- aUCGA-CGCCGUgcgcuCGAAAGaaaccgagugcCGCGAGCg -3'
miRNA:   3'- -AGCUaGCGGCGgu---GCUUUC-----------GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 4849 0.68 0.53528
Target:  5'- -aGAUgGCCGUCAUGAuuuccGGCGUcGGCu -3'
miRNA:   3'- agCUAgCGGCGGUGCUu----UCGCGcUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.