miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 44865 0.68 0.528911
Target:  5'- -aGAUCGCCGCgCGCGAcAAccugcccgacucgcuGCGCcAGCu -3'
miRNA:   3'- agCUAGCGGCG-GUGCU-UU---------------CGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 15721 0.68 0.524681
Target:  5'- gCGGcUCGUCGCgGCGcugaAGGGCGcCGAGUa -3'
miRNA:   3'- aGCU-AGCGGCGgUGC----UUUCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 4635 0.68 0.524681
Target:  5'- aUUGAgCGCCaUCGCGAucauGGCGaCGGGCa -3'
miRNA:   3'- -AGCUaGCGGcGGUGCUu---UCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 6640 0.68 0.524681
Target:  5'- cUCGAUCG-CGCU-CGgcAGCGCGcucGGCg -3'
miRNA:   3'- -AGCUAGCgGCGGuGCuuUCGCGC---UCG- -5'
17040 3' -55.9 NC_004333.2 + 14329 0.68 0.524681
Target:  5'- cCGuUCGCCGCCucuuCGAuguagacGCGCGAcacgGCg -3'
miRNA:   3'- aGCuAGCGGCGGu---GCUuu-----CGCGCU----CG- -5'
17040 3' -55.9 NC_004333.2 + 32252 0.68 0.524681
Target:  5'- cCGAUUGUgGCgGCGAuGGCaccGUGGGCg -3'
miRNA:   3'- aGCUAGCGgCGgUGCUuUCG---CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 28662 0.68 0.524681
Target:  5'- -gGAUCGCgGUCGCaGAAuuccGGUGCGuGCu -3'
miRNA:   3'- agCUAGCGgCGGUG-CUU----UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 27656 0.68 0.524681
Target:  5'- -----gGCCGCCAgCGAGcGGCGCG-GCg -3'
miRNA:   3'- agcuagCGGCGGU-GCUU-UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 6466 0.68 0.523625
Target:  5'- gUUGAUCgcgccguGCCGCC-CGAAGuugccgcccGCGuCGAGCa -3'
miRNA:   3'- -AGCUAG-------CGGCGGuGCUUU---------CGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 22003 0.68 0.514163
Target:  5'- ----gCGUCGgCGCGAAucagcGCGCGGGCg -3'
miRNA:   3'- agcuaGCGGCgGUGCUUu----CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 29413 0.68 0.514163
Target:  5'- cCGuUCGCCGUCGCG---GCGCuGGCu -3'
miRNA:   3'- aGCuAGCGGCGGUGCuuuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 20989 0.68 0.514163
Target:  5'- aCGGUCuGCCGCCACaccu-CGgGGGCa -3'
miRNA:   3'- aGCUAG-CGGCGGUGcuuucGCgCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30685 0.68 0.514163
Target:  5'- gUCGGU-GCgGUCgaguGCGAGcAGCGUGAGCg -3'
miRNA:   3'- -AGCUAgCGgCGG----UGCUU-UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 15761 0.68 0.514163
Target:  5'- cUCGucaGCgaGCUGCGcGAGGCGCGGGCc -3'
miRNA:   3'- -AGCuagCGg-CGGUGC-UUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 29831 0.68 0.511024
Target:  5'- aUCGccgCGCCGCCAgucgacugaucguuCGcagcGAAGCGCGcGCg -3'
miRNA:   3'- -AGCua-GCGGCGGU--------------GC----UUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 47318 0.69 0.503731
Target:  5'- cUCGcaagCGCCG-CACGAAAGC-CGAGa -3'
miRNA:   3'- -AGCua--GCGGCgGUGCUUUCGcGCUCg -5'
17040 3' -55.9 NC_004333.2 + 3005 0.69 0.503731
Target:  5'- cCGGcgCGuCCGCCGCGAcguAGCGCGcGa -3'
miRNA:   3'- aGCUa-GC-GGCGGUGCUu--UCGCGCuCg -5'
17040 3' -55.9 NC_004333.2 + 28289 0.69 0.503731
Target:  5'- -gGAUgGCCcagaGCUGCu-GAGCGCGGGCg -3'
miRNA:   3'- agCUAgCGG----CGGUGcuUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 36265 0.69 0.493393
Target:  5'- gCGcgCGCCGCUGCGcauGC-CGGGCc -3'
miRNA:   3'- aGCuaGCGGCGGUGCuuuCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 11327 0.69 0.493393
Target:  5'- cUGGUCGCgCGCgAUGAAGGCgGCGcGGUu -3'
miRNA:   3'- aGCUAGCG-GCGgUGCUUUCG-CGC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.