miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 9718 0.67 0.578347
Target:  5'- gCGGuUCGCgaaaCGCCGCGucGGCGacauGAGCg -3'
miRNA:   3'- aGCU-AGCG----GCGGUGCuuUCGCg---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 9769 0.69 0.493393
Target:  5'- cUCGAUCGCCGUCuuGAccGUgGCcGGCg -3'
miRNA:   3'- -AGCUAGCGGCGGugCUuuCG-CGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 9875 0.83 0.062208
Target:  5'- cCGGUCGCCGCgugCACGGucGCGCGuGCa -3'
miRNA:   3'- aGCUAGCGGCG---GUGCUuuCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 10168 0.67 0.600178
Target:  5'- -gGGUCGgCGCaCugGAagccGAGCgacGCGGGCa -3'
miRNA:   3'- agCUAGCgGCG-GugCU----UUCG---CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 10276 0.7 0.433594
Target:  5'- gCG-UCGCCGagagCGCGAAu-CGCGAGCa -3'
miRNA:   3'- aGCuAGCGGCg---GUGCUUucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 10431 0.66 0.687823
Target:  5'- aCGAcgcUCGUCGaucuCGCGcAGGCGCG-GCa -3'
miRNA:   3'- aGCU---AGCGGCg---GUGCuUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 10762 0.67 0.567494
Target:  5'- aCG--UGCaCGCCGCGcAAAcCGCGAGCg -3'
miRNA:   3'- aGCuaGCG-GCGGUGC-UUUcGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 11040 0.69 0.453072
Target:  5'- gUGAUCGCgucgUGCgGCGuGAGCGCuucGAGCa -3'
miRNA:   3'- aGCUAGCG----GCGgUGCuUUCGCG---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 11327 0.69 0.493393
Target:  5'- cUGGUCGCgCGCgAUGAAGGCgGCGcGGUu -3'
miRNA:   3'- aGCUAGCG-GCGgUGCUUUCG-CGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 11812 0.66 0.655065
Target:  5'- aCGA-CGCgGCCAUc--AGCGCGAcgGCg -3'
miRNA:   3'- aGCUaGCGgCGGUGcuuUCGCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 11873 0.75 0.201635
Target:  5'- cCGGUCgGCCGaaACG--GGCGCGAGCa -3'
miRNA:   3'- aGCUAG-CGGCggUGCuuUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 12170 0.69 0.460001
Target:  5'- cUGAUCGUgauccccaucaaggCGaCCGCGAAccaGGuCGCGAGCa -3'
miRNA:   3'- aGCUAGCG--------------GC-GGUGCUU---UC-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 12410 0.69 0.462988
Target:  5'- --uGUCGCCGCCuuCGGccAAGCGCuggacguagguGAGCa -3'
miRNA:   3'- agcUAGCGGCGGu-GCU--UUCGCG-----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 13394 0.69 0.469996
Target:  5'- cUGGUCGUCGCCuuugaucuugaaauACGGGuGCGCGcGGCc -3'
miRNA:   3'- aGCUAGCGGCGG--------------UGCUUuCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 13455 0.71 0.387118
Target:  5'- aCGGUCGUgcgcaccgCGUCGCGAAuGCGCaGGCg -3'
miRNA:   3'- aGCUAGCG--------GCGGUGCUUuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 13593 0.68 0.545953
Target:  5'- cCGAUCGCuuCGCCccaaguGCGGAuGCacucgucgGCGAGCa -3'
miRNA:   3'- aGCUAGCG--GCGG------UGCUUuCG--------CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 13765 0.68 0.545953
Target:  5'- cCGcgCGCCGCuCGCGc-GGCGUGuAGUu -3'
miRNA:   3'- aGCuaGCGGCG-GUGCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 13848 0.71 0.39524
Target:  5'- aCGggCGCCGCguCGAgcgcauuGAGCGCGccGCg -3'
miRNA:   3'- aGCuaGCGGCGguGCU-------UUCGCGCu-CG- -5'
17040 3' -55.9 NC_004333.2 + 13887 0.67 0.622116
Target:  5'- gCGAagUCgGCCGgCACGGGcuGCGCG-GCg -3'
miRNA:   3'- aGCU--AG-CGGCgGUGCUUu-CGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 13926 0.66 0.655065
Target:  5'- gCGAUCGUgGCCGCugccgccAGCGUG-GCc -3'
miRNA:   3'- aGCUAGCGgCGGUGcuu----UCGCGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.