miRNA display CGI


Results 81 - 100 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 19787 0.7 0.433594
Target:  5'- -gGAUCGU-GCCGCGcguuGAGUGCGAuGCg -3'
miRNA:   3'- agCUAGCGgCGGUGCu---UUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 19947 0.66 0.648482
Target:  5'- gCGGcgaGCCGCCGCGAGugcuuugcccgacuGCGCGcugucGGCc -3'
miRNA:   3'- aGCUag-CGGCGGUGCUUu-------------CGCGC-----UCG- -5'
17040 3' -55.9 NC_004333.2 + 20026 0.67 0.622116
Target:  5'- gCGuAUCGCUGUCAaccuCGgcGGCGCGcAGUa -3'
miRNA:   3'- aGC-UAGCGGCGGU----GCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 20515 0.67 0.578347
Target:  5'- cCGGcCGCCGCCGCGccgcuCGCuGGCg -3'
miRNA:   3'- aGCUaGCGGCGGUGCuuuc-GCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 20936 0.67 0.615528
Target:  5'- cCGA-CGCCcggcggcuacGCCACGGgccGgacgcaaacgcgcgcGGCGCGGGCg -3'
miRNA:   3'- aGCUaGCGG----------CGGUGCU---U---------------UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 20989 0.68 0.514163
Target:  5'- aCGGUCuGCCGCCACaccu-CGgGGGCa -3'
miRNA:   3'- aGCUAG-CGGCGGUGcuuucGCgCUCG- -5'
17040 3' -55.9 NC_004333.2 + 21055 0.67 0.567494
Target:  5'- uUCGAagCGCaguuCCACGAGGGuCGCGcGCa -3'
miRNA:   3'- -AGCUa-GCGgc--GGUGCUUUC-GCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 21103 0.68 0.556694
Target:  5'- aCGAaCGCCGUCGgucUGAuguuCGCGAGCg -3'
miRNA:   3'- aGCUaGCGGCGGU---GCUuuc-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 21613 0.72 0.335855
Target:  5'- aCGAUCGCaGggACGAAgaccGGCGCGGGCu -3'
miRNA:   3'- aGCUAGCGgCggUGCUU----UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 22003 0.68 0.514163
Target:  5'- ----gCGUCGgCGCGAAucagcGCGCGGGCg -3'
miRNA:   3'- agcuaGCGGCgGUGCUUu----CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 22106 0.67 0.578347
Target:  5'- cCGGaagCGCCGCCGCugcGGCGCcacuGGCa -3'
miRNA:   3'- aGCUa--GCGGCGGUGcuuUCGCGc---UCG- -5'
17040 3' -55.9 NC_004333.2 + 22255 0.69 0.462988
Target:  5'- cCGcgCGCaauaGCUACGugcAAGCGCaGGGCg -3'
miRNA:   3'- aGCuaGCGg---CGGUGCu--UUCGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 22507 0.67 0.578347
Target:  5'- -aGGUCGCCGCguuCGCGAcGGC-CG-GCa -3'
miRNA:   3'- agCUAGCGGCG---GUGCUuUCGcGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 22881 0.66 0.633103
Target:  5'- gCGAUCGUacuggcgcuCGUgACGAgcagAAGCGCGGuGCu -3'
miRNA:   3'- aGCUAGCG---------GCGgUGCU----UUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 23029 0.66 0.655065
Target:  5'- gUCGAUCggaggcaucggGCagGCCGCGAAcGUGCGcGCc -3'
miRNA:   3'- -AGCUAG-----------CGg-CGGUGCUUuCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 23426 0.81 0.087816
Target:  5'- gCGAUCGUCGCCGCGuu--CGUGAGCg -3'
miRNA:   3'- aGCUAGCGGCGGUGCuuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 24041 0.69 0.462988
Target:  5'- gUGAagGCgGCCGCGAAcauuGCGCGcuGCg -3'
miRNA:   3'- aGCUagCGgCGGUGCUUu---CGCGCu-CG- -5'
17040 3' -55.9 NC_004333.2 + 24082 0.69 0.483153
Target:  5'- cCGAUCGCCGa-ACaucGAGCGCauGAGCg -3'
miRNA:   3'- aGCUAGCGGCggUGcu-UUCGCG--CUCG- -5'
17040 3' -55.9 NC_004333.2 + 24281 0.67 0.622116
Target:  5'- cCGAaaUUGUCGCCcgGCGAcuGCGCGAc- -3'
miRNA:   3'- aGCU--AGCGGCGG--UGCUuuCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 24741 0.71 0.396149
Target:  5'- gUCGAgaaGCCGCuCACGAAcgcGGCGaCGAucGCu -3'
miRNA:   3'- -AGCUag-CGGCG-GUGCUU---UCGC-GCU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.