Results 101 - 120 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 24953 | 0.69 | 0.462988 |
Target: 5'- gCGuUCGCCGCCGUGAucaagacGGCgGCGGGUa -3' miRNA: 3'- aGCuAGCGGCGGUGCUu------UCG-CGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 25473 | 0.71 | 0.369469 |
Target: 5'- -gGAUCGUCGCgGCGAcAGC-CGGGUu -3' miRNA: 3'- agCUAGCGGCGgUGCUuUCGcGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 25858 | 0.66 | 0.664925 |
Target: 5'- gUCGAU-GCgaaucugcagcagCGCUugGu--GCGCGAGCg -3' miRNA: 3'- -AGCUAgCG-------------GCGGugCuuuCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 25902 | 0.66 | 0.653969 |
Target: 5'- aUGGUCGgCGUCuCGGGcuggcuuGGCGCaGAGCg -3' miRNA: 3'- aGCUAGCgGCGGuGCUU-------UCGCG-CUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 26110 | 0.66 | 0.655065 |
Target: 5'- uUCGGgguaGCCGCC-CGcAAGCaggaCGAGCu -3' miRNA: 3'- -AGCUag--CGGCGGuGCuUUCGc---GCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 26447 | 0.67 | 0.600178 |
Target: 5'- gUCGAacuUCGCUGCguCGAGcugcuGGCGCacgugcgcauaGAGCg -3' miRNA: 3'- -AGCU---AGCGGCGguGCUU-----UCGCG-----------CUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 26631 | 0.67 | 0.567494 |
Target: 5'- gUUGAUCGuugucgcaCCGCCGCucguGAGCGUGAucGCg -3' miRNA: 3'- -AGCUAGC--------GGCGGUGcu--UUCGCGCU--CG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 27000 | 0.67 | 0.578347 |
Target: 5'- cCGAgcagGCCgGCCuGCGgcAGCGCGaAGCg -3' miRNA: 3'- aGCUag--CGG-CGG-UGCuuUCGCGC-UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 27306 | 0.66 | 0.655065 |
Target: 5'- cUCG-UCGCCGCCcauACcuuguGGCGUucGAGCa -3' miRNA: 3'- -AGCuAGCGGCGG---UGcuu--UCGCG--CUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 27533 | 0.72 | 0.335855 |
Target: 5'- gUCGAUCGCaaguGCCGCGccGGgGCGAaucuGCg -3' miRNA: 3'- -AGCUAGCGg---CGGUGCuuUCgCGCU----CG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 27656 | 0.68 | 0.524681 |
Target: 5'- -----gGCCGCCAgCGAGcGGCGCG-GCg -3' miRNA: 3'- agcuagCGGCGGU-GCUU-UCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 27745 | 0.7 | 0.414612 |
Target: 5'- uUCG--CGCCGCCGaacguguuuuCGAAGGCGgugaCGAGCg -3' miRNA: 3'- -AGCuaGCGGCGGU----------GCUUUCGC----GCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 27959 | 1.11 | 0.000573 |
Target: 5'- gUCGAUCGCCGCCACGAAAGCGCGAGCc -3' miRNA: 3'- -AGCUAGCGGCGGUGCUUUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28289 | 0.69 | 0.503731 |
Target: 5'- -gGAUgGCCcagaGCUGCu-GAGCGCGGGCg -3' miRNA: 3'- agCUAgCGG----CGGUGcuUUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28457 | 0.66 | 0.655065 |
Target: 5'- cCGucUUGCaCGCCACc--AGCGcCGAGCa -3' miRNA: 3'- aGCu-AGCG-GCGGUGcuuUCGC-GCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28661 | 0.75 | 0.201099 |
Target: 5'- aCGAUUGCCcauacgGCCACGAGcgccgccAGCGCGccAGCg -3' miRNA: 3'- aGCUAGCGG------CGGUGCUU-------UCGCGC--UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28662 | 0.68 | 0.524681 |
Target: 5'- -gGAUCGCgGUCGCaGAAuuccGGUGCGuGCu -3' miRNA: 3'- agCUAGCGgCGGUG-CUU----UCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28750 | 0.67 | 0.589244 |
Target: 5'- aCGcgCGUgaaCGUCGCGGGuAGCGCG-GCg -3' miRNA: 3'- aGCuaGCG---GCGGUGCUU-UCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28758 | 0.76 | 0.171585 |
Target: 5'- gCGAgCGCCGCguCGAccGCGCGGGUc -3' miRNA: 3'- aGCUaGCGGCGguGCUuuCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28979 | 0.66 | 0.676942 |
Target: 5'- gCGAUCaguugcgcgGCCGCCGgGucGGCGUGcGCn -3' miRNA: 3'- aGCUAG---------CGGCGGUgCuuUCGCGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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