miRNA display CGI


Results 121 - 140 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 29014 0.76 0.1763
Target:  5'- aUCGcgCGCgGCuagCACGAuaaccAGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCGgCG---GUGCUu----UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 29051 0.71 0.378224
Target:  5'- ----gCGCCGcCCACGAucGCGcCGAGUu -3'
miRNA:   3'- agcuaGCGGC-GGUGCUuuCGC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 29273 0.66 0.676942
Target:  5'- cUCGAUCGCCacaaacaggcgGCCuuCGAu-GCGUucuGGGCg -3'
miRNA:   3'- -AGCUAGCGG-----------CGGu-GCUuuCGCG---CUCG- -5'
17040 3' -55.9 NC_004333.2 + 29364 0.68 0.542744
Target:  5'- uUCGAUagcagcacgcgcccUGCgGCCGCGcgauAAGCGCGguucAGCg -3'
miRNA:   3'- -AGCUA--------------GCGgCGGUGCu---UUCGCGC----UCG- -5'
17040 3' -55.9 NC_004333.2 + 29413 0.68 0.514163
Target:  5'- cCGuUCGCCGUCGCG---GCGCuGGCu -3'
miRNA:   3'- aGCuAGCGGCGGUGCuuuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 29618 0.7 0.424039
Target:  5'- uUCGGauUCGCCGCCGCGccGGCuGCc-GCa -3'
miRNA:   3'- -AGCU--AGCGGCGGUGCuuUCG-CGcuCG- -5'
17040 3' -55.9 NC_004333.2 + 29651 0.71 0.352378
Target:  5'- -gGGUUGCCGCCggcuGCGAAGGcCGCuGcAGCg -3'
miRNA:   3'- agCUAGCGGCGG----UGCUUUC-GCG-C-UCG- -5'
17040 3' -55.9 NC_004333.2 + 29758 0.69 0.473016
Target:  5'- gUCGA-CGCCGCCgaucGCGAGGcguuGCGCuucggacggcacGAGCa -3'
miRNA:   3'- -AGCUaGCGGCGG----UGCUUU----CGCG------------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 29831 0.68 0.511024
Target:  5'- aUCGccgCGCCGCCAgucgacugaucguuCGcagcGAAGCGCGcGCg -3'
miRNA:   3'- -AGCua-GCGGCGGU--------------GC----UUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 29974 0.79 0.107107
Target:  5'- gCGGccgCGCUGCCAcCGGcgccGAGCGCGAGCa -3'
miRNA:   3'- aGCUa--GCGGCGGU-GCU----UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30054 0.66 0.633103
Target:  5'- cUGAUCGaCCG-UGCcAAAGCGCGGGUc -3'
miRNA:   3'- aGCUAGC-GGCgGUGcUUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30232 0.71 0.351538
Target:  5'- aUCGAcgCGCCGCgCGCGAucAGUGCGuucaugacguacaGGCg -3'
miRNA:   3'- -AGCUa-GCGGCG-GUGCUu-UCGCGC-------------UCG- -5'
17040 3' -55.9 NC_004333.2 + 30373 0.66 0.633103
Target:  5'- -gGAUCGUCGaCCGCGAugccgaacgucgAAGCGaCcGGCg -3'
miRNA:   3'- agCUAGCGGC-GGUGCU------------UUCGC-GcUCG- -5'
17040 3' -55.9 NC_004333.2 + 30542 0.66 0.676942
Target:  5'- gCGAacgUGUCgGCCACGGcaccGGGCGCGgccGGCg -3'
miRNA:   3'- aGCUa--GCGG-CGGUGCU----UUCGCGC---UCG- -5'
17040 3' -55.9 NC_004333.2 + 30685 0.68 0.514163
Target:  5'- gUCGGU-GCgGUCgaguGCGAGcAGCGUGAGCg -3'
miRNA:   3'- -AGCUAgCGgCGG----UGCUU-UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30760 0.7 0.433594
Target:  5'- uUUGAUCGUCagcgcgucguGaCCGCGcu-GCGCGAGCa -3'
miRNA:   3'- -AGCUAGCGG----------C-GGUGCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 31095 0.67 0.589244
Target:  5'- uUCGG-CGCCugGCC-CGucagcGGCGCGAGUu -3'
miRNA:   3'- -AGCUaGCGG--CGGuGCuu---UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 31230 0.69 0.462988
Target:  5'- cCGGUCGCgacgGCCGCGc-GGCGC-AGCg -3'
miRNA:   3'- aGCUAGCGg---CGGUGCuuUCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 31326 0.78 0.130324
Target:  5'- gUCGAUCGCCuugGCCGCGAc-GCGCugcucGAGCg -3'
miRNA:   3'- -AGCUAGCGG---CGGUGCUuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 32252 0.68 0.524681
Target:  5'- cCGAUUGUgGCgGCGAuGGCaccGUGGGCg -3'
miRNA:   3'- aGCUAGCGgCGgUGCUuUCG---CGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.