miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 44552 0.67 0.622116
Target:  5'- -aGGUCGaCUGCUACGGcccgcAGGCGCccgacuGGGCg -3'
miRNA:   3'- agCUAGC-GGCGGUGCU-----UUCGCG------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 44448 0.66 0.687823
Target:  5'- aUUGAU--CCGCC-CGggGGUGCGcgaGGCg -3'
miRNA:   3'- -AGCUAgcGGCGGuGCuuUCGCGC---UCG- -5'
17040 3' -55.9 NC_004333.2 + 44379 0.67 0.600178
Target:  5'- -aGGUgCGCUGCU-CGgcGGCGCGuGCg -3'
miRNA:   3'- agCUA-GCGGCGGuGCuuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 44003 0.66 0.687823
Target:  5'- ----aCGCCGCUGCagcacGAGCGCGGcGCg -3'
miRNA:   3'- agcuaGCGGCGGUGcu---UUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 43609 0.66 0.653969
Target:  5'- aCGAUUGCCGaCCGC---AGCGCcgaauggaucaaaGGGCu -3'
miRNA:   3'- aGCUAGCGGC-GGUGcuuUCGCG-------------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 43577 0.79 0.110169
Target:  5'- gUCGcgCGCuCGCCucgaacGCGAGuGCGCGAGCa -3'
miRNA:   3'- -AGCuaGCG-GCGG------UGCUUuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 43538 0.66 0.676942
Target:  5'- ----cCGUCGCCAUGAucGCGauGGCg -3'
miRNA:   3'- agcuaGCGGCGGUGCUuuCGCgcUCG- -5'
17040 3' -55.9 NC_004333.2 + 43044 0.68 0.554541
Target:  5'- gCGGcUCGcCCGUgACGGAcgacaaugugcuGCGCGAGCu -3'
miRNA:   3'- aGCU-AGC-GGCGgUGCUUu-----------CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 42763 0.67 0.600178
Target:  5'- aCGA-CGCUGCCGCGAuGGCagaagaacGCGAa- -3'
miRNA:   3'- aGCUaGCGGCGGUGCUuUCG--------CGCUcg -5'
17040 3' -55.9 NC_004333.2 + 42684 0.71 0.387118
Target:  5'- cCGAUCGUCuCCACGccGGCcGaCGAGCg -3'
miRNA:   3'- aGCUAGCGGcGGUGCuuUCG-C-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 41857 0.66 0.676942
Target:  5'- gCGGUCGUCcUCACGGcuGCGC-AGCc -3'
miRNA:   3'- aGCUAGCGGcGGUGCUuuCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 41829 0.67 0.622116
Target:  5'- aCGAcggCGCCcgGCCGCGA--GCGguCGGGCa -3'
miRNA:   3'- aGCUa--GCGG--CGGUGCUuuCGC--GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 41756 0.67 0.622116
Target:  5'- cUCGcgCGCCggGCUAUGGGucuGCaCGAGCg -3'
miRNA:   3'- -AGCuaGCGG--CGGUGCUUu--CGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 41525 0.67 0.600178
Target:  5'- cUCGAgcgCGCCGagCGCGcugccGAGCGCGAu- -3'
miRNA:   3'- -AGCUa--GCGGCg-GUGCu----UUCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 41311 0.67 0.566412
Target:  5'- cCGAgcUCGCCcgGCgCGCGAuggacguGAcGCGCGAGUg -3'
miRNA:   3'- aGCU--AGCGG--CG-GUGCU-------UU-CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 40860 0.69 0.483153
Target:  5'- cUGGUCGCCgGCgAUGGucGCGCGAc- -3'
miRNA:   3'- aGCUAGCGG-CGgUGCUuuCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 40708 0.67 0.589244
Target:  5'- cCGAUCGCCGCgAuCGucaccGGCgGCG-GCa -3'
miRNA:   3'- aGCUAGCGGCGgU-GCuu---UCG-CGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 40301 0.66 0.666019
Target:  5'- -aGA-CGUgGaCGCGAuggggcGAGCGCGAGCu -3'
miRNA:   3'- agCUaGCGgCgGUGCU------UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 40199 0.67 0.578347
Target:  5'- cCGAUUcCCGCUuggcacgcuguACGAAGuGCGCGAcGCg -3'
miRNA:   3'- aGCUAGcGGCGG-----------UGCUUU-CGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 40108 0.71 0.360853
Target:  5'- aUCGAcauccUCGUCGCCccgAUGAAGGCcGcCGAGCu -3'
miRNA:   3'- -AGCU-----AGCGGCGG---UGCUUUCG-C-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.