miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 40027 0.67 0.600178
Target:  5'- cUCGcgCGgCGCCACG---GCGCGGacGCc -3'
miRNA:   3'- -AGCuaGCgGCGGUGCuuuCGCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 39993 0.66 0.676942
Target:  5'- cUCGA-CGCCGCUcacugaguacGCGAuGGaCGCG-GCc -3'
miRNA:   3'- -AGCUaGCGGCGG----------UGCUuUC-GCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 39853 0.68 0.53528
Target:  5'- aCGggCGCguaaCGCauaGCG-GGGCGCGAGCc -3'
miRNA:   3'- aGCuaGCG----GCGg--UGCuUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 39515 0.66 0.687823
Target:  5'- cCGAcggCaCCGUCACGAgcAAGC-CGGGCg -3'
miRNA:   3'- aGCUa--GcGGCGGUGCU--UUCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 39195 0.74 0.255204
Target:  5'- gUCGGUCGCCGCCGCGcacGGcCGCa--- -3'
miRNA:   3'- -AGCUAGCGGCGGUGCuu-UC-GCGcucg -5'
17040 3' -55.9 NC_004333.2 + 39161 0.74 0.261828
Target:  5'- gCGAgcgCGCCGCCugGcAAGcCGCGAacGCc -3'
miRNA:   3'- aGCUa--GCGGCGGugCuUUC-GCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 39156 0.66 0.686737
Target:  5'- cCGAUCucgacgacauccuGCCGCC-CGugcuGCGCGcGCu -3'
miRNA:   3'- aGCUAG-------------CGGCGGuGCuuu-CGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 38989 0.75 0.212626
Target:  5'- gCGAUCgacacuGCCGUCGCGAAcgaacgcaAGCGCGcAGCu -3'
miRNA:   3'- aGCUAG------CGGCGGUGCUU--------UCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 38828 0.66 0.684564
Target:  5'- cCGA-CGCCGCgcgccgacgacgagCAUGAAAGUGCcgaagacaacGAGCu -3'
miRNA:   3'- aGCUaGCGGCG--------------GUGCUUUCGCG----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 38751 0.66 0.655065
Target:  5'- aCGAUggaaGCgGCCACGAGcGGCaucgcCGAGCu -3'
miRNA:   3'- aGCUAg---CGgCGGUGCUU-UCGc----GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 38630 0.7 0.405314
Target:  5'- aCGAUCGgCGCCGCauuGAAGCagcucguCGAGCa -3'
miRNA:   3'- aGCUAGCgGCGGUGc--UUUCGc------GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 38427 0.71 0.393426
Target:  5'- aUCGAgacgcUUGCCGCguCGAAcuuugucgauccguGGCGCGAcGCg -3'
miRNA:   3'- -AGCU-----AGCGGCGguGCUU--------------UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 38367 0.71 0.396149
Target:  5'- aUCGAcgCGCUGUCGCGugucGGGUGCGccGGCg -3'
miRNA:   3'- -AGCUa-GCGGCGGUGCu---UUCGCGC--UCG- -5'
17040 3' -55.9 NC_004333.2 + 37729 0.72 0.304528
Target:  5'- gUCGGcaaGCUGCCGCGccuGCGCGAGa -3'
miRNA:   3'- -AGCUag-CGGCGGUGCuuuCGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 37181 0.67 0.600178
Target:  5'- gCGAcaCGCCGCuCACGAc-GCGCGccGGUg -3'
miRNA:   3'- aGCUa-GCGGCG-GUGCUuuCGCGC--UCG- -5'
17040 3' -55.9 NC_004333.2 + 36300 0.7 0.424039
Target:  5'- gCGAUacgCGCCGCC-CGAGuAGuCGcCGGGCg -3'
miRNA:   3'- aGCUA---GCGGCGGuGCUU-UC-GC-GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 36265 0.69 0.493393
Target:  5'- gCGcgCGCCGCUGCGcauGC-CGGGCc -3'
miRNA:   3'- aGCuaGCGGCGGUGCuuuCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 36234 0.73 0.297056
Target:  5'- gCGcUCGaCCGCCugGAgcGCGCGuaauGGCg -3'
miRNA:   3'- aGCuAGC-GGCGGugCUuuCGCGC----UCG- -5'
17040 3' -55.9 NC_004333.2 + 35786 0.7 0.424039
Target:  5'- gCGAcacUgGCgCGCCGgGcGGGGCGCGGGCg -3'
miRNA:   3'- aGCU---AgCG-GCGGUgC-UUUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 34635 0.66 0.633103
Target:  5'- cCGGccUgGCCGCCgGCGGcaacGcCGCGAGCa -3'
miRNA:   3'- aGCU--AgCGGCGG-UGCUuu--C-GCGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.