miRNA display CGI


Results 61 - 80 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 34529 0.68 0.53528
Target:  5'- cUCGcgCaGCUGCC-CGAGuaccGCGCGAuGCa -3'
miRNA:   3'- -AGCuaG-CGGCGGuGCUUu---CGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 34415 0.66 0.64409
Target:  5'- ----aCGCCG-CGCGAGcGGCGCGcGGCg -3'
miRNA:   3'- agcuaGCGGCgGUGCUU-UCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 34268 0.66 0.670393
Target:  5'- aCGAUCgccacggcaGCCGCCGCGcagcccgugccggccGAcuucgcgcGGCGCGGcGCg -3'
miRNA:   3'- aGCUAG---------CGGCGGUGC---------------UU--------UCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 33913 0.7 0.433594
Target:  5'- cUCGAaggcgUGCCGCCGCuGGcucgaaagAGGCGCGcGCg -3'
miRNA:   3'- -AGCUa----GCGGCGGUG-CU--------UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 33313 0.67 0.622116
Target:  5'- aUCGAgccaaccgGCgCGCCACGGAucagauucguuGCGCGAGa -3'
miRNA:   3'- -AGCUag------CG-GCGGUGCUUu----------CGCGCUCg -5'
17040 3' -55.9 NC_004333.2 + 33030 0.68 0.545953
Target:  5'- gUCGAUCGCuuugagCGCCGCac--GUGCGuAGCg -3'
miRNA:   3'- -AGCUAGCG------GCGGUGcuuuCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 32806 0.66 0.664925
Target:  5'- gUCGAgcgguUCGCgaucagucaggaaCGCCACGugcaacauGAGCGCG-GCc -3'
miRNA:   3'- -AGCU-----AGCG-------------GCGGUGCu-------UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32756 0.76 0.18113
Target:  5'- -aGGUCGCUGCCGcCGGccauAAGCGCG-GCa -3'
miRNA:   3'- agCUAGCGGCGGU-GCU----UUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32669 0.69 0.453072
Target:  5'- cUUGAcgCGCCGCCgguGAccGcCGCGAGCa -3'
miRNA:   3'- -AGCUa-GCGGCGGug-CUuuC-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 32349 0.76 0.191141
Target:  5'- -gGGUCGCUGCC-CGAuAGCGUGcGCa -3'
miRNA:   3'- agCUAGCGGCGGuGCUuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 32294 0.7 0.433594
Target:  5'- aCGAUgGCgGUCACGgcGGCucgcucGCGGGCu -3'
miRNA:   3'- aGCUAgCGgCGGUGCuuUCG------CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 32252 0.68 0.524681
Target:  5'- cCGAUUGUgGCgGCGAuGGCaccGUGGGCg -3'
miRNA:   3'- aGCUAGCGgCGgUGCUuUCG---CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 31326 0.78 0.130324
Target:  5'- gUCGAUCGCCuugGCCGCGAc-GCGCugcucGAGCg -3'
miRNA:   3'- -AGCUAGCGG---CGGUGCUuuCGCG-----CUCG- -5'
17040 3' -55.9 NC_004333.2 + 31230 0.69 0.462988
Target:  5'- cCGGUCGCgacgGCCGCGc-GGCGC-AGCg -3'
miRNA:   3'- aGCUAGCGg---CGGUGCuuUCGCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 31095 0.67 0.589244
Target:  5'- uUCGG-CGCCugGCC-CGucagcGGCGCGAGUu -3'
miRNA:   3'- -AGCUaGCGG--CGGuGCuu---UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30760 0.7 0.433594
Target:  5'- uUUGAUCGUCagcgcgucguGaCCGCGcu-GCGCGAGCa -3'
miRNA:   3'- -AGCUAGCGG----------C-GGUGCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30685 0.68 0.514163
Target:  5'- gUCGGU-GCgGUCgaguGCGAGcAGCGUGAGCg -3'
miRNA:   3'- -AGCUAgCGgCGG----UGCUU-UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 30542 0.66 0.676942
Target:  5'- gCGAacgUGUCgGCCACGGcaccGGGCGCGgccGGCg -3'
miRNA:   3'- aGCUa--GCGG-CGGUGCU----UUCGCGC---UCG- -5'
17040 3' -55.9 NC_004333.2 + 30373 0.66 0.633103
Target:  5'- -gGAUCGUCGaCCGCGAugccgaacgucgAAGCGaCcGGCg -3'
miRNA:   3'- agCUAGCGGC-GGUGCU------------UUCGC-GcUCG- -5'
17040 3' -55.9 NC_004333.2 + 30232 0.71 0.351538
Target:  5'- aUCGAcgCGCCGCgCGCGAucAGUGCGuucaugacguacaGGCg -3'
miRNA:   3'- -AGCUa-GCGGCG-GUGCUu-UCGCGC-------------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.