Results 81 - 100 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17040 | 3' | -55.9 | NC_004333.2 | + | 30054 | 0.66 | 0.633103 |
Target: 5'- cUGAUCGaCCG-UGCcAAAGCGCGGGUc -3' miRNA: 3'- aGCUAGC-GGCgGUGcUUUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29974 | 0.79 | 0.107107 |
Target: 5'- gCGGccgCGCUGCCAcCGGcgccGAGCGCGAGCa -3' miRNA: 3'- aGCUa--GCGGCGGU-GCU----UUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29831 | 0.68 | 0.511024 |
Target: 5'- aUCGccgCGCCGCCAgucgacugaucguuCGcagcGAAGCGCGcGCg -3' miRNA: 3'- -AGCua-GCGGCGGU--------------GC----UUUCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29758 | 0.69 | 0.473016 |
Target: 5'- gUCGA-CGCCGCCgaucGCGAGGcguuGCGCuucggacggcacGAGCa -3' miRNA: 3'- -AGCUaGCGGCGG----UGCUUU----CGCG------------CUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29651 | 0.71 | 0.352378 |
Target: 5'- -gGGUUGCCGCCggcuGCGAAGGcCGCuGcAGCg -3' miRNA: 3'- agCUAGCGGCGG----UGCUUUC-GCG-C-UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29618 | 0.7 | 0.424039 |
Target: 5'- uUCGGauUCGCCGCCGCGccGGCuGCc-GCa -3' miRNA: 3'- -AGCU--AGCGGCGGUGCuuUCG-CGcuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29413 | 0.68 | 0.514163 |
Target: 5'- cCGuUCGCCGUCGCG---GCGCuGGCu -3' miRNA: 3'- aGCuAGCGGCGGUGCuuuCGCGcUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29364 | 0.68 | 0.542744 |
Target: 5'- uUCGAUagcagcacgcgcccUGCgGCCGCGcgauAAGCGCGguucAGCg -3' miRNA: 3'- -AGCUA--------------GCGgCGGUGCu---UUCGCGC----UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29273 | 0.66 | 0.676942 |
Target: 5'- cUCGAUCGCCacaaacaggcgGCCuuCGAu-GCGUucuGGGCg -3' miRNA: 3'- -AGCUAGCGG-----------CGGu-GCUuuCGCG---CUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29051 | 0.71 | 0.378224 |
Target: 5'- ----gCGCCGcCCACGAucGCGcCGAGUu -3' miRNA: 3'- agcuaGCGGC-GGUGCUuuCGC-GCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 29014 | 0.76 | 0.1763 |
Target: 5'- aUCGcgCGCgGCuagCACGAuaaccAGCGCGAGCa -3' miRNA: 3'- -AGCuaGCGgCG---GUGCUu----UCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28979 | 0.66 | 0.676942 |
Target: 5'- gCGAUCaguugcgcgGCCGCCGgGucGGCGUGcGCn -3' miRNA: 3'- aGCUAG---------CGGCGGUgCuuUCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28758 | 0.76 | 0.171585 |
Target: 5'- gCGAgCGCCGCguCGAccGCGCGGGUc -3' miRNA: 3'- aGCUaGCGGCGguGCUuuCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28750 | 0.67 | 0.589244 |
Target: 5'- aCGcgCGUgaaCGUCGCGGGuAGCGCG-GCg -3' miRNA: 3'- aGCuaGCG---GCGGUGCUU-UCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28662 | 0.68 | 0.524681 |
Target: 5'- -gGAUCGCgGUCGCaGAAuuccGGUGCGuGCu -3' miRNA: 3'- agCUAGCGgCGGUG-CUU----UCGCGCuCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28661 | 0.75 | 0.201099 |
Target: 5'- aCGAUUGCCcauacgGCCACGAGcgccgccAGCGCGccAGCg -3' miRNA: 3'- aGCUAGCGG------CGGUGCUU-------UCGCGC--UCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28457 | 0.66 | 0.655065 |
Target: 5'- cCGucUUGCaCGCCACc--AGCGcCGAGCa -3' miRNA: 3'- aGCu-AGCG-GCGGUGcuuUCGC-GCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 28289 | 0.69 | 0.503731 |
Target: 5'- -gGAUgGCCcagaGCUGCu-GAGCGCGGGCg -3' miRNA: 3'- agCUAgCGG----CGGUGcuUUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 27959 | 1.11 | 0.000573 |
Target: 5'- gUCGAUCGCCGCCACGAAAGCGCGAGCc -3' miRNA: 3'- -AGCUAGCGGCGGUGCUUUCGCGCUCG- -5' |
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17040 | 3' | -55.9 | NC_004333.2 | + | 27745 | 0.7 | 0.414612 |
Target: 5'- uUCG--CGCCGCCGaacguguuuuCGAAGGCGgugaCGAGCg -3' miRNA: 3'- -AGCuaGCGGCGGU----------GCUUUCGC----GCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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