miRNA display CGI


Results 101 - 120 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 27656 0.68 0.524681
Target:  5'- -----gGCCGCCAgCGAGcGGCGCG-GCg -3'
miRNA:   3'- agcuagCGGCGGU-GCUU-UCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 27533 0.72 0.335855
Target:  5'- gUCGAUCGCaaguGCCGCGccGGgGCGAaucuGCg -3'
miRNA:   3'- -AGCUAGCGg---CGGUGCuuUCgCGCU----CG- -5'
17040 3' -55.9 NC_004333.2 + 27306 0.66 0.655065
Target:  5'- cUCG-UCGCCGCCcauACcuuguGGCGUucGAGCa -3'
miRNA:   3'- -AGCuAGCGGCGG---UGcuu--UCGCG--CUCG- -5'
17040 3' -55.9 NC_004333.2 + 27000 0.67 0.578347
Target:  5'- cCGAgcagGCCgGCCuGCGgcAGCGCGaAGCg -3'
miRNA:   3'- aGCUag--CGG-CGG-UGCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 26631 0.67 0.567494
Target:  5'- gUUGAUCGuugucgcaCCGCCGCucguGAGCGUGAucGCg -3'
miRNA:   3'- -AGCUAGC--------GGCGGUGcu--UUCGCGCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 26447 0.67 0.600178
Target:  5'- gUCGAacuUCGCUGCguCGAGcugcuGGCGCacgugcgcauaGAGCg -3'
miRNA:   3'- -AGCU---AGCGGCGguGCUU-----UCGCG-----------CUCG- -5'
17040 3' -55.9 NC_004333.2 + 26110 0.66 0.655065
Target:  5'- uUCGGgguaGCCGCC-CGcAAGCaggaCGAGCu -3'
miRNA:   3'- -AGCUag--CGGCGGuGCuUUCGc---GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 25902 0.66 0.653969
Target:  5'- aUGGUCGgCGUCuCGGGcuggcuuGGCGCaGAGCg -3'
miRNA:   3'- aGCUAGCgGCGGuGCUU-------UCGCG-CUCG- -5'
17040 3' -55.9 NC_004333.2 + 25858 0.66 0.664925
Target:  5'- gUCGAU-GCgaaucugcagcagCGCUugGu--GCGCGAGCg -3'
miRNA:   3'- -AGCUAgCG-------------GCGGugCuuuCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 25473 0.71 0.369469
Target:  5'- -gGAUCGUCGCgGCGAcAGC-CGGGUu -3'
miRNA:   3'- agCUAGCGGCGgUGCUuUCGcGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 24953 0.69 0.462988
Target:  5'- gCGuUCGCCGCCGUGAucaagacGGCgGCGGGUa -3'
miRNA:   3'- aGCuAGCGGCGGUGCUu------UCG-CGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 24741 0.71 0.396149
Target:  5'- gUCGAgaaGCCGCuCACGAAcgcGGCGaCGAucGCu -3'
miRNA:   3'- -AGCUag-CGGCG-GUGCUU---UCGC-GCU--CG- -5'
17040 3' -55.9 NC_004333.2 + 24281 0.67 0.622116
Target:  5'- cCGAaaUUGUCGCCcgGCGAcuGCGCGAc- -3'
miRNA:   3'- aGCU--AGCGGCGG--UGCUuuCGCGCUcg -5'
17040 3' -55.9 NC_004333.2 + 24082 0.69 0.483153
Target:  5'- cCGAUCGCCGa-ACaucGAGCGCauGAGCg -3'
miRNA:   3'- aGCUAGCGGCggUGcu-UUCGCG--CUCG- -5'
17040 3' -55.9 NC_004333.2 + 24041 0.69 0.462988
Target:  5'- gUGAagGCgGCCGCGAAcauuGCGCGcuGCg -3'
miRNA:   3'- aGCUagCGgCGGUGCUUu---CGCGCu-CG- -5'
17040 3' -55.9 NC_004333.2 + 23426 0.81 0.087816
Target:  5'- gCGAUCGUCGCCGCGuu--CGUGAGCg -3'
miRNA:   3'- aGCUAGCGGCGGUGCuuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 23029 0.66 0.655065
Target:  5'- gUCGAUCggaggcaucggGCagGCCGCGAAcGUGCGcGCc -3'
miRNA:   3'- -AGCUAG-----------CGg-CGGUGCUUuCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 22881 0.66 0.633103
Target:  5'- gCGAUCGUacuggcgcuCGUgACGAgcagAAGCGCGGuGCu -3'
miRNA:   3'- aGCUAGCG---------GCGgUGCU----UUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 22507 0.67 0.578347
Target:  5'- -aGGUCGCCGCguuCGCGAcGGC-CG-GCa -3'
miRNA:   3'- agCUAGCGGCG---GUGCUuUCGcGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 22255 0.69 0.462988
Target:  5'- cCGcgCGCaauaGCUACGugcAAGCGCaGGGCg -3'
miRNA:   3'- aGCuaGCGg---CGGUGCu--UUCGCG-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.