miRNA display CGI


Results 121 - 140 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17040 3' -55.9 NC_004333.2 + 22106 0.67 0.578347
Target:  5'- cCGGaagCGCCGCCGCugcGGCGCcacuGGCa -3'
miRNA:   3'- aGCUa--GCGGCGGUGcuuUCGCGc---UCG- -5'
17040 3' -55.9 NC_004333.2 + 22003 0.68 0.514163
Target:  5'- ----gCGUCGgCGCGAAucagcGCGCGGGCg -3'
miRNA:   3'- agcuaGCGGCgGUGCUUu----CGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 21613 0.72 0.335855
Target:  5'- aCGAUCGCaGggACGAAgaccGGCGCGGGCu -3'
miRNA:   3'- aGCUAGCGgCggUGCUU----UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 21103 0.68 0.556694
Target:  5'- aCGAaCGCCGUCGgucUGAuguuCGCGAGCg -3'
miRNA:   3'- aGCUaGCGGCGGU---GCUuuc-GCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 21055 0.67 0.567494
Target:  5'- uUCGAagCGCaguuCCACGAGGGuCGCGcGCa -3'
miRNA:   3'- -AGCUa-GCGgc--GGUGCUUUC-GCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 20989 0.68 0.514163
Target:  5'- aCGGUCuGCCGCCACaccu-CGgGGGCa -3'
miRNA:   3'- aGCUAG-CGGCGGUGcuuucGCgCUCG- -5'
17040 3' -55.9 NC_004333.2 + 20936 0.67 0.615528
Target:  5'- cCGA-CGCCcggcggcuacGCCACGGgccGgacgcaaacgcgcgcGGCGCGGGCg -3'
miRNA:   3'- aGCUaGCGG----------CGGUGCU---U---------------UCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 20515 0.67 0.578347
Target:  5'- cCGGcCGCCGCCGCGccgcuCGCuGGCg -3'
miRNA:   3'- aGCUaGCGGCGGUGCuuuc-GCGcUCG- -5'
17040 3' -55.9 NC_004333.2 + 20026 0.67 0.622116
Target:  5'- gCGuAUCGCUGUCAaccuCGgcGGCGCGcAGUa -3'
miRNA:   3'- aGC-UAGCGGCGGU----GCuuUCGCGC-UCG- -5'
17040 3' -55.9 NC_004333.2 + 19947 0.66 0.648482
Target:  5'- gCGGcgaGCCGCCGCGAGugcuuugcccgacuGCGCGcugucGGCc -3'
miRNA:   3'- aGCUag-CGGCGGUGCUUu-------------CGCGC-----UCG- -5'
17040 3' -55.9 NC_004333.2 + 19787 0.7 0.433594
Target:  5'- -gGAUCGU-GCCGCGcguuGAGUGCGAuGCg -3'
miRNA:   3'- agCUAGCGgCGGUGCu---UUCGCGCU-CG- -5'
17040 3' -55.9 NC_004333.2 + 19394 0.72 0.312145
Target:  5'- gCGAUgggaagucgCGCCGCCGCGAcccGCGCGGucgacGCg -3'
miRNA:   3'- aGCUA---------GCGGCGGUGCUuu-CGCGCU-----CG- -5'
17040 3' -55.9 NC_004333.2 + 19302 0.76 0.191141
Target:  5'- gCGAUCGCgCGgCACGAgcgcuuGAGCGCGccGGCu -3'
miRNA:   3'- aGCUAGCG-GCgGUGCU------UUCGCGC--UCG- -5'
17040 3' -55.9 NC_004333.2 + 19214 0.69 0.453072
Target:  5'- cUGAUCGCCGCguuCGAccGCGUGAacaacGCg -3'
miRNA:   3'- aGCUAGCGGCGgu-GCUuuCGCGCU-----CG- -5'
17040 3' -55.9 NC_004333.2 + 19073 0.66 0.666019
Target:  5'- -aGA-CGUCGCCACuc-GGCGCG-GCc -3'
miRNA:   3'- agCUaGCGGCGGUGcuuUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 18899 0.67 0.589244
Target:  5'- aUCGAagGCCGCCuguuuguGGCGauCGAGCu -3'
miRNA:   3'- -AGCUagCGGCGGugcuu--UCGC--GCUCG- -5'
17040 3' -55.9 NC_004333.2 + 18804 0.69 0.483153
Target:  5'- aUCG--CGCgGCCGC-AGGGCGCGuGCu -3'
miRNA:   3'- -AGCuaGCGgCGGUGcUUUCGCGCuCG- -5'
17040 3' -55.9 NC_004333.2 + 18600 0.7 0.433594
Target:  5'- ----aCGaCCGgCGCGGcAGGCGCGGGCg -3'
miRNA:   3'- agcuaGC-GGCgGUGCU-UUCGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 18426 0.67 0.589244
Target:  5'- gCGAUCGgCGgCGuCGAcacCGCGAGCg -3'
miRNA:   3'- aGCUAGCgGCgGU-GCUuucGCGCUCG- -5'
17040 3' -55.9 NC_004333.2 + 18283 0.69 0.483153
Target:  5'- cCGcgCGCgGCC-CGAucGCGC-AGCg -3'
miRNA:   3'- aGCuaGCGgCGGuGCUuuCGCGcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.